Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ELAVL4	1996	hgsc.bcm.edu	37	1	50642764	50642765	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	ELAVL4_ENST00000357083,NS,carcinoma,0,2	ELAVL4	NM_001144775	exon3	c.304_305del	p.102_102del	.	.	73.0	13.0	71.0	0.0	.	124	.	Atlas-Indel
PRPF38B	55119	hgsc.bcm.edu	37	1	109241987	109241989	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PRPF38B	NM_018061	exon6	c.985_987del	p.329_329del	.	.	183.0	30.0	155.0	0.0	.	55	.	Pindel,Atlas-Indel
CCDC73	493860	hgsc.bcm.edu	37	11	32635415	32635415	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001008391	exon16	c.A2449A	p.K817K	TTACCTGATTCTC	.	97.0	4.0	89.0	0.0	.	.	.	Atlas-SNP
ALDH18A1	5832	hgsc.bcm.edu	37	10	97370021	97370021	+	Silent	SNP	G	G	A	rs147842812		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_002860	exon17	c.C2139T	p.H713H	GTCTACGTGCTGC	.	99.0	35.0	86.0	0.0	0.000	.	.	Atlas-SNP
RFX4	5992	hgsc.bcm.edu	37	12	106995124	106995124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001206691	exon1	c.G70A	p.E24K	TCCACTGGTAATG	.	170.0	36.0	159.0	0.0	.	.	.	Atlas-SNP
RABL6	55684	hgsc.bcm.edu	37	9	139702690	139702690	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_024718	exon1	c.C42T	p.A14A	CCAGGCCCCGGGC	.	81.0	29.0	103.0	0.0	.	.	.	Atlas-SNP
CEBPZ	10153	hgsc.bcm.edu	37	2	37450403	37450403	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_005760	exon3	c.G1791C	p.Q597H	TGGCATCTGTTGA	.	146.0	23.0	116.0	0.0	.	.	.	Atlas-SNP
BASP1P1	646201	hgsc.bcm.edu	37	13	23471388	23471388	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	AGAGAGAGGAGAG	.	57.0	4.0	51.0	0.0	.	.	.	Atlas-SNP
BASP1P1	646201	hgsc.bcm.edu	37	13	23471389	23471389	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	GAGAGAGGAGAGA	.	57.0	4.0	50.0	0.0	.	.	.	Atlas-SNP
RC3H2	54542	hgsc.bcm.edu	37	9	125643061	125643061	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_018835	exon6	c.G772C	p.D258H	CTTCATCTCTTTT	.	86.0	15.0	88.0	0.0	.	.	.	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	37	20	58560110	58560110	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_177980	exon7	c.C763T	p.L255L	CCGTCACTGTCAT	.	143.0	20.0	106.0	0.0	.	.	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	37	4	134073757	134073757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_032961	exon1	c.A2462T	p.Y821F	ACTGCTATCAGGT	.	77.0	12.0	109.0	0.0	.	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179425956	179425956	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001267550	exon326	c.G84903A	p.K28301K	ATTGCACTTCAGC	.	130.0	25.0	72.0	0.0	.	.	.	Atlas-SNP
RASSF2	9770	hgsc.bcm.edu	37	20	4768332	4768332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_014737	exon10	c.A760T	p.I254F	TGGAGATCTGCTC	.	142.0	31.0	112.0	0.0	.	.	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	37	4	134072091	134072091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_032961	exon1	c.G796C	p.G266R	CCCCCAGGCACTC	.	50.0	9.0	73.0	0.0	.	.	.	Atlas-SNP
MIR137HG	400765	hgsc.bcm.edu	37	1	98511786	98511786	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	.	.	.	.	TGCCGCCGCCGCC	.	88.0	17.0	98.0	0.0	.	.	.	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	37	1	34643423	34643423	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001134734	exon1	c.G33A	p.L11L	AGCCCTGGGTGGA	.	99.0	20.0	75.0	0.0	.	.	.	Atlas-SNP
ZNF491	126069	hgsc.bcm.edu	37	19	11917208	11917208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_152356	exon3	c.T440C	p.L147P	TATACCTTACCCA	.	99.0	13.0	77.0	0.0	.	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	37	MT	11796	11796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	ENST00000361381	exon1	c.A1037G	p.Q346R	TCTCTCAAGGACT	.	29.0	5.0	13.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55593605	55593605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	KIT,NS,germ_cell_tumour,+2,59	KIT	NM_000222	exon11	c.G1671T	p.W557C	ACAGTGGAAGGTT	.	266.0	28.0	122.0	0.0	.	+2	59	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	103.0	6.0	63.0	0.0	.	.	.	Atlas-SNP
