Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
NEFH	4744	hgsc.bcm.edu	37	22	29885591	29885592	+	In_Frame_Ins	INS	-	-	CCTGAGAAGGCCAAGTCC	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.,2	.	NM_021076	exon4	c.1962_1963insCCTGAGAAGGCCAAGTCC	p.S654delinsSPEKAKS	.	.	123.0	57.0	117.0	0.0	.	178	2	Atlas-Indel
LAMA3	3909	hgsc.bcm.edu	37	18	21427447	21427480	+	Frame_Shift_Del	DEL	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	-	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_198129	exon32	c.3950_3983del	p.1317_1328del	.	.	31.0	12.0	30.0	0.0	.	.	.	Pindel
SKIDA1	387640	hgsc.bcm.edu	37	10	21805466	21805466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	C10orf140_ENST00000449193,caecum,carcinoma,0,4	C10orf140_ENST00000449193	NM_207371	exon4	c.G1286A	p.G429E	CTGCCCCCCTCCT	.	31.0	6.0	36.0	0.0	.	0	4	Atlas-SNP
SPATA18	132671	hgsc.bcm.edu	37	4	52943177	52943177	+	Missense_Mutation	SNP	G	G	A	rs193921037	bycluster;by1000genomes	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	SPATA18_ENST00000295213,NS,adenoma,0,2	SPATA18_ENST00000295213	NM_145263	exon7	c.G991A	p.V331I	GAGACCGTTCAGC	.	215.0	26.0	174.0	0.0	.	0	2	Atlas-SNP
ELMO2	63916	hgsc.bcm.edu	37	20	45014804	45014804	+	Silent	SNP	G	G	A	rs201990540	bycluster;by1000genomes	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	ELMO2,NS,carcinoma,-1,1	ELMO2	NM_182764	exon8	c.C636T	p.A212A	TTCCTCGGCTATC	.	64.0	5.0	43.0	1.0	0.002	-1	1	Atlas-SNP
ND4	0	hgsc.bcm.edu	37	MT	12077	12077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	ENST00000361381	exon1	c.C1318T	p.H440Y	TTCATACACCTAT	.	33.0	25.0	20.0	0.0	.	.	.	Atlas-SNP
KRT4	3851	hgsc.bcm.edu	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	KRT4,rectum,carcinoma,0,3	KRT4	NM_002272	exon1	c.C237T	p.G79G	GCCAAAGCCTCCA	.	117.0	17.0	110.0	0.0	.	0	3	Atlas-SNP
TAS2R43	259289	hgsc.bcm.edu	37	12	11244878	11244878	+	RNA	SNP	A	A	G	rs369719862		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	TCCGGAATTGGTT	.	93.0	6.0	18.0	0.0	.	.	.	Atlas-SNP
KRT4	3851	hgsc.bcm.edu	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele;byhapmap	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	KRT4,rectum,carcinoma,0,1	KRT4	NM_002272	exon1	c.T240C	p.F80F	AGTGCCAAAGCCT	.	116.0	17.0	108.0	1.0	.	0	1	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	37	12	274696	274696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_001170738	exon10	c.G2806C	p.E936Q	GAGAACGAGTGTA	.	242.0	11.0	81.0	0.0	.	.	.	Atlas-SNP
PAIP1	10605	hgsc.bcm.edu	37	5	43539098	43539098	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006451	exon5	c.A774G	p.K258K	ATCCCCTTTTGCA	.	61.0	4.0	54.0	0.0	.	.	.	Atlas-SNP
RPGR	6103	hgsc.bcm.edu	37	X	38145180	38145180	+	Silent	SNP	C	C	T	rs373542041		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_001034853	exon15	c.G3072A	p.E1024E	TTCCACCTCCCCT	.	26.0	11.0	18.0	0.0	.	.	.	Atlas-SNP
C1orf61	10485	hgsc.bcm.edu	37	1	156384450	156384450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006365	exon4	c.G167A	p.R56Q	ACCGCCCGGGAGC	.	78.0	20.0	60.0	0.0	.	.	.	Atlas-SNP
DPCD	25911	hgsc.bcm.edu	37	10	103361002	103361002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_015448	exon4	c.C313T	p.R105W	CAGTGGCGGATTC	.	80.0	18.0	69.0	0.0	.	.	.	Atlas-SNP
RAPGEF5	9771	hgsc.bcm.edu	37	7	22348122	22348122	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_012294	exon5	c.C57T	p.D19D	ATGCTGGTCCACT	.	90.0	9.0	55.0	0.0	.	.	.	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	37	17	1579989	1579989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006445	exon16	c.C2198A	p.T733K	ATGGGCGTCGGCA	.	57.0	4.0	72.0	0.0	.	.	.	Atlas-SNP
SNRNP200	23020	hgsc.bcm.edu	37	2	96943998	96943998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_014014	exon39	c.C5587A	p.H1863N	CTTCATGGTGCCG	.	93.0	6.0	79.0	0.0	.	.	.	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	37	3	167034805	167034805	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_024687	exon14	c.C1182T	p.V394V	CAGTTCGACTATC	.	142.0	22.0	96.0	0.0	.	.	.	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	37	12	274692	274692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_001170738	exon10	c.G2802C	p.E934D	CTTTGAGAACGAG	.	253.0	11.0	87.0	0.0	.	.	.	Atlas-SNP
PRLR	5618	hgsc.bcm.edu	37	5	35065642	35065642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	PRLR,NS,carcinoma,-1,1	PRLR	NM_000949	exon10	c.C1418T	p.A473V	TGGGTTGCCTTTC	.	136.0	48.0	157.0	0.0	.	-1	1	Atlas-SNP
WASH3P	374666	hgsc.bcm.edu	37	15	102515335	102515335	+	RNA	SNP	C	C	G	rs201001946		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	WASH3P,NS,carcinoma,0,4	WASH3P	.	.	.	.	CGAAAGCTGGAGA	.	41.0	3.0	47.0	0.0	.	0	4	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	38986924	38986924	+	Silent	SNP	G	G	T	rs370261565	alternate_allele	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	RYR1,NS,carcinoma,0,1	RYR1	NM_001042723	exon40	c.G6618T	p.T2206T	CGAGACGGTCATG	.	42.0	2.0	33.0	0.0	.	0	1	Atlas-SNP
ITGA7	3679	hgsc.bcm.edu	37	12	56092570	56092570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	ITGA7_ENST00000553804,colon,carcinoma,0,2	ITGA7_ENST00000553804	NM_001144996	exon6	c.G934A	p.E312K	TAACCTCGGGCAC	.	100.0	25.0	92.0	0.0	.	0	2	Atlas-SNP
MSL2	55167	hgsc.bcm.edu	37	3	135871188	135871188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_018133	exon2	c.G535A	p.E179K	TGCTTTCAGACAT	.	132.0	28.0	126.0	0.0	.	.	.	Atlas-SNP
GAL3ST2	64090	hgsc.bcm.edu	37	2	242742846	242742846	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_022134	exon4	c.C462G	p.Y154X	CTACTACAAAACC	.	181.0	39.0	131.0	0.0	.	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187557879	187557879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_005245	exon5	c.G3832A	p.D1278N	CCTTGTCGGTGGC	.	164.0	31.0	115.0	0.0	.	.	.	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	37	5	140573719	140573719	+	Missense_Mutation	SNP	G	G	A	rs148484995	bycluster;byfrequency;by1000genomes	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	PCDHB10,NS,lymphoid_neoplasm,-2,1	PCDHB10	NM_018930	exon1	c.G1594A	p.G532S	CGCGTGGGCGCCA	.	84.0	5.0	58.0	1.0	0.039	-2	1	Atlas-SNP
KRT32	3882	hgsc.bcm.edu	37	17	39619137	39619137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_002278	exon6	c.C1162T	p.R388W	CCAGCCGGGCCCG	.	96.0	5.0	78.0	0.0	.	.	.	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	37	12	274694	274694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_001170738	exon10	c.A2804G	p.N935S	TTGAGAACGAGTG	.	247.0	11.0	85.0	0.0	.	.	.	Atlas-SNP
CALB1	793	hgsc.bcm.edu	37	8	91078131	91078131	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_004929	exon6	c.C445T	p.L149L	CCATTAGGTCTGT	.	120.0	16.0	114.0	0.0	.	.	.	Atlas-SNP
