Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
GPNMB	10457	hgsc.bcm.edu	37	7	23286485	23286486	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_002510	exon1	c.8_9del	p.3_3del	.	.	87.0	15.0	85.0	0.0	.	.	.	Pindel,Atlas-Indel
GRID2IP	392862	hgsc.bcm.edu	37	7	6547896	6547901	+	In_Frame_Del	DEL	CTGAGC	CTGAGC	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	CTGAGC	CTGAGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001145118	exon13	c.2260_2265del	p.754_755del	.	.	72.0	11.0	38.0	0.0	.	.	.	Atlas-Indel
RPL5	6125	hgsc.bcm.edu	37	1	93299200	93299201	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_000969	exon3	c.171_172del	p.57_58del	.	.	49.0	12.0	48.0	0.0	.	.	.	Pindel,Atlas-Indel
DCLRE1B	64858	hgsc.bcm.edu	37	1	114448290	114448290	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_022836	exon1	c.T82A	p.F28I	CTCTTCTTCTTGT	.	174.0	26.0	109.0	0.0	.	.	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045900	7045900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001007026	exon5	c.G1470C	p.Q490H	GCAGCAGCAGCAG	.	130.0	19.0	61.0	0.0	.	.	.	Atlas-SNP
SYMPK	8189	hgsc.bcm.edu	37	19	46345588	46345588	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_004819	exon9	c.C1007G	p.A336G	TTGCGGGCGATCT	.	64.0	19.0	90.0	0.0	.	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	37	MT	7444	7444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	ENST00000361624	exon1	c.G1541A	p.X514K	AATCTAGACAAAA	.	21.0	18.0	7.0	0.0	.	.	.	Atlas-SNP
WDR60	55112	hgsc.bcm.edu	37	7	158704304	158704304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_018051	exon12	c.G1524T	p.L508F	TCTCTTGGATCTA	.	114.0	5.0	132.0	0.0	.	.	.	Atlas-SNP
CASR	846	hgsc.bcm.edu	37	3	122002841	122002841	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001178065	exon7	c.C2070T	p.R690R	CCTGCGCCAGCCG	.	157.0	60.0	85.0	0.0	.	.	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	37	15	85326876	85326876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_014630	exon4	c.A970C	p.K324Q	AGCCCCAAAATGC	.	117.0	25.0	146.0	0.0	.	.	.	Atlas-SNP
EIF3J	8669	hgsc.bcm.edu	37	15	44829418	44829418	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_003758	exon1	c.G26C	p.G9A	CGGCGGGGGACTC	.	396.0	76.0	197.0	0.0	.	.	.	Atlas-SNP
PHLDA1	22822	hgsc.bcm.edu	37	12	76424937	76424937	+	Silent	SNP	T	T	C	rs76176478	bycluster	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_007350	exon1	c.A585G	p.Q195Q	CTGCTGTTGCTGC	.	49.0	12.0	26.0	0.0	.	.	.	Atlas-SNP
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	rs76607193	bycluster;byfrequency	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC	.	81.0	4.0	101.0	0.0	0.003	0	1	Atlas-SNP
DISP2	85455	hgsc.bcm.edu	37	15	40656718	40656718	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_033510	exon4	c.G576A	p.R192R	GGCCCGGCTGCCC	.	73.0	35.0	54.0	0.0	.	.	.	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	37	1	177249621	177249621	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_021165	exon8	c.C1309T	p.L437L	ACTTTCCTGGAAC	.	311.0	68.0	287.0	0.0	.	.	.	Atlas-SNP
IZUMO1	284359	hgsc.bcm.edu	37	19	49248527	49248527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_182575	exon3	c.A254G	p.K85R	GACCCCTTTTGCA	.	77.0	4.0	121.0	0.0	.	.	.	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	37	17	10309436	10309436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	MYH8,NS,carcinoma,+1,1	MYH8	NM_002472	exon21	c.C2354T	p.A785V	ATTTGGGCTAATT	.	65.0	15.0	89.0	0.0	.	+1	1	Atlas-SNP
PTDSS2	81490	hgsc.bcm.edu	37	11	488541	488541	+	Missense_Mutation	SNP	G	G	T	rs34809643	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_030783	exon8	c.G748T	p.V250L	ATGGACGTGCTCG	.	66.0	4.0	46.0	0.0	.	.	.	Atlas-SNP
USP8	9101	hgsc.bcm.edu	37	15	50782530	50782530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001128610	exon14	c.C2042T	p.P681L	ACCCACCGGAAAT	.	154.0	7.0	172.0	0.0	.	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	37	8	77775665	77775665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_024721	exon11	c.G9715A	p.D3239N	CATGTCGATCCTA	.	109.0	28.0	93.0	0.0	.	.	.	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	37	14	105352457	105352457	+	Silent	SNP	G	G	A	rs372643760		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001112726	exon11	c.G2025A	p.P675P	AGACCCGGGCCTC	.	34.0	5.0	21.0	0.0	.	.	.	Atlas-SNP
MYEF2	50804	hgsc.bcm.edu	37	15	48450208	48450208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_016132	exon9	c.A967G	p.K323E	GTGTTTTACCATC	.	129.0	28.0	176.0	0.0	.	.	.	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	37	2	8919088	8919088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_020738	exon19	c.A2552G	p.N851S	CTTGCATTGCTTA	.	78.0	20.0	105.0	0.0	.	.	.	Atlas-SNP
HSF4	3299	hgsc.bcm.edu	37	16	67203680	67203680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001040667	exon15	c.T1471C	p.S491P	AGTCCCTCCCCCT	.	53.0	6.0	41.0	0.0	.	.	.	Atlas-SNP
IQCF6	440956	hgsc.bcm.edu	37	3	51812955	51812955	+	Missense_Mutation	SNP	C	C	T	rs370141442		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001143833	exon2	c.G8A	p.R3H	GTCCGGCGCACCA	.	115.0	19.0	88.0	0.0	.	.	.	Atlas-SNP
APOBEC3A	200315	hgsc.bcm.edu	37	22	39357586	39357586	+	Silent	SNP	T	T	C	rs202076860	bycluster	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	APOBEC3A,caecum,carcinoma,+1,1	APOBEC3A	NM_145699	exon3	c.T369C	p.R123R	ACTGCGTATCTTC	.	49.0	5.0	65.0	2.0	0.001	+1	1	Atlas-SNP
EBF1	1879	hgsc.bcm.edu	37	5	158158144	158158144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_024007	exon11	c.A1058G	p.D353G	CCATAATCGATGG	.	49.0	21.0	80.0	0.0	.	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152484132	152484132	+	Missense_Mutation	SNP	C	C	T	rs377180119		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001271208	exon69	c.G10048A	p.D3350N	CCACATCGCTGAC	.	171.0	31.0	188.0	0.0	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	37	MT	15657	15657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	ENST00000361789	exon1	c.T911C	p.I304T	CAATAATCCCCAT	.	35.0	19.0	17.0	0.0	.	.	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824956	20824956	+	Silent	SNP	C	C	G	rs201180283		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_182700	exon2	c.G480C	p.G160G	GCCGCCCCCGCCG	.	71.0	12.0	46.0	0.0	.	.	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	37	15	85327404	85327404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_014630	exon4	c.C1498A	p.P500T	CTCCTGCCCAAAG	.	69.0	12.0	68.0	0.0	.	.	.	Atlas-SNP
DDHD1	80821	hgsc.bcm.edu	37	14	53619480	53619480	+	Missense_Mutation	SNP	T	T	C	rs200797826	bycluster	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001160147	exon1	c.A337G	p.S113G	AGGAGCTGCCGCC	.	214.0	60.0	102.0	0.0	.	.	.	Atlas-SNP
OR4L1	122742	hgsc.bcm.edu	37	14	20528467	20528467	+	Silent	SNP	C	C	T	rs200018603	bycluster;by1000genomes	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001004717	exon1	c.C264T	p.D88D	CACTGACCACAAG	.	73.0	6.0	64.0	0.0	0.259	.	.	Atlas-SNP
