Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
HUWE1	10075	hgsc.bcm.edu	37	X	53574783	53574785	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	HUWE1	NM_031407	exon68	c.10486_10488del	p.3496_3496del	.	.	160.0	11.0	95.0	0.0	.	724	.	Atlas-Indel
SETD3	84193	hgsc.bcm.edu	37	14	99879294	99879294	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SETD3	NM_199123	exon8	c.844delG	p.G282fs	.	.	154.0	15.0	149.0	0.0	.	56	.	Atlas-Indel
MLLT3	4300	hgsc.bcm.edu	37	9	20414311	20414319	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	rs373338988	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	CTGCTGCTG	CTGCTGCTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	MLLT3,caecum,carcinoma,0,1	MLLT3	NM_004529	exon5	c.526_534del	p.176_178del	.	.	62.0	13.0	84.0	0.0	.	125	.	Atlas-Indel
SCML2	10389	hgsc.bcm.edu	37	X	18276363	18276374	+	In_Frame_Del	DEL	ACAGACTTGAGA	ACAGACTTGAGA	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	ACAGACTTGAGA	ACAGACTTGAGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SCML2	NM_006089	exon10	c.1070_1075del	p.357_359del	.	.	240.0	22.0	168.0	0.0	.	81	.	Atlas-Indel
OBSCN	84033	hgsc.bcm.edu	37	1	228503691	228503691	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	OBSCN,colon,carcinoma,0,1	OBSCN	NM_001271223	exon61	c.16026delC	p.N5342fs	.	.	149.0	10.0	185.0	0.0	.	2142	.	Atlas-Indel
APOA1	335	hgsc.bcm.edu	37	11	116708059	116708059	+	Splice_Site	SNP	A	A	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	APOA1,NS,carcinoma,-2,1	APOA1	NM_000039	exon3	c.43+2T>G	.	ACACCTACCCGTC	.	137.0	14.0	121.0	1.0	.	-2	1	Atlas-SNP
GCNT2	2651	hgsc.bcm.edu	37	6	10586756	10586756	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_145655	exon1	c.C534G	p.V178V	CCTTGTCGCCTCT	.	149.0	9.0	146.0	0.0	.	.	.	Atlas-SNP
ETAA1	54465	hgsc.bcm.edu	37	2	67630985	67630985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_019002	exon5	c.C1171T	p.P391S	AGTGAACCTTTTG	.	212.0	28.0	328.0	0.0	.	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	37	4	74283804	74283804	+	Splice_Site	SNP	G	G	T	rs77256214	bycluster	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000477	exon12	c.1429-1G>T	.	TCTTTAGCTATCC	.	87.0	17.0	107.0	0.0	.	.	.	Atlas-SNP
TAF1B	9014	hgsc.bcm.edu	37	2	10016027	10016027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005680	exon7	c.T587A	p.V196D	ATGGAGTTGAATA	.	118.0	9.0	123.0	0.0	.	.	.	Atlas-SNP
LHX8	431707	hgsc.bcm.edu	37	1	75602877	75602877	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001001933	exon4	c.C198A	p.S66S	GGGCTCCGGCTGC	.	255.0	18.0	273.0	0.0	.	.	.	Atlas-SNP
XIAP	331	hgsc.bcm.edu	37	X	123040895	123040895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001204401	exon7	c.G1358T	p.C453F	AAATCTGTATGGA	.	202.0	35.0	155.0	0.0	.	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	37	7	117368303	117368303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_033427	exon17	c.T3895C	p.S1299P	AGGGGGAGGGCGC	.	140.0	7.0	155.0	0.0	.	.	.	Atlas-SNP
HLA-H	3136	hgsc.bcm.edu	37	6	29855800	29855800	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	ENSG00000196306,right_lower_lobe,carcinoma,0,3	ENSG00000196306	.	.	.	.	TTCATCTCCGTCG	.	107.0	10.0	82.0	2.0	.	0	3	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123954584	123954584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_206862	exon8	c.C5864A	p.T1955N	TTGAGACCCCGGA	.	63.0	14.0	58.0	0.0	.	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149483197	149483197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_198455	exon23	c.G3265T	p.G1089W	GTGAATGGGGTGA	.	99.0	14.0	103.0	0.0	.	.	.	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	37	X	71829496	71829496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_002637	exon23	c.C2584A	p.P862T	CTCGAGGTTCTGG	.	159.0	42.0	121.0	0.0	.	.	.	Atlas-SNP
CNNM4	26504	hgsc.bcm.edu	37	2	97475063	97475063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020184	exon7	c.C2137G	p.R713G	ATCACTCGGCAGC	.	112.0	6.0	112.0	0.0	.	.	.	Atlas-SNP
GPC6	10082	hgsc.bcm.edu	37	13	94680124	94680124	+	Missense_Mutation	SNP	G	G	C	rs201329039	by1000genomes;alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005708	exon4	c.G853C	p.D285H	GACCTCGACACAG	.	70.0	8.0	98.0	0.0	.	.	.	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	37	X	109695094	109695094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020769	exon3	c.G1249A	p.G417R	CTAATGGGAGCCC	.	76.0	9.0	44.0	0.0	.	.	.	Atlas-SNP
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296600	39296600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	KRTAP4-6,NS,carcinoma,0,2	KRTAP4-6	NM_030976	exon1	c.G140A	p.R47K	TGGGGTCTGCAGC	.	40.0	4.0	50.0	1.0	.	0	2	Atlas-SNP
ZNF506	440515	hgsc.bcm.edu	37	19	19906184	19906184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001099269	exon4	c.A512C	p.K171T	AAAGATTTTTTTC	.	146.0	10.0	174.0	0.0	.	.	.	Atlas-SNP
SHOC2	8036	hgsc.bcm.edu	37	10	112724174	112724174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_007373	exon2	c.T58C	p.S20P	GTACCATCAGCCA	.	73.0	27.0	108.0	0.0	.	.	.	Atlas-SNP
GPR124	25960	hgsc.bcm.edu	37	8	37689047	37689047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_032777	exon8	c.G1039A	p.E347K	GTGCTGGAGACCT	.	53.0	10.0	91.0	0.0	.	.	.	Atlas-SNP
HLA-J	3137	hgsc.bcm.edu	37	6	29977011	29977011	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	GAGCCCATGGGGG	.	87.0	18.0	108.0	0.0	.	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	37	1	175328773	175328773	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_003285	exon15	c.C2949T	p.Y983Y	AATGACGTAGTTC	.	113.0	11.0	132.0	0.0	.	.	.	Atlas-SNP
HOXA3	3200	hgsc.bcm.edu	37	7	27150188	27150188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_030661	exon2	c.C72A	p.F24L	ATAAGCGAACCCG	.	161.0	17.0	190.0	0.0	.	.	.	Atlas-SNP
DENND1C	79958	hgsc.bcm.edu	37	19	6476886	6476886	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_024898	exon10	c.C660A	p.T220T	GCTGGCGGTGAGC	.	50.0	6.0	60.0	0.0	.	.	.	Atlas-SNP
ZNF614	80110	hgsc.bcm.edu	37	19	52519423	52519423	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_025040	exon5	c.T1428C	p.C476C	TGTATGACATCTC	.	76.0	8.0	101.0	0.0	.	.	.	Atlas-SNP
IRX4	50805	hgsc.bcm.edu	37	5	1879733	1879733	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	IRX4,colon,carcinoma,-1,1	IRX4	NM_016358	exon4	c.G621A	p.T207T	CGGCCACGTCATC	.	111.0	11.0	117.0	0.0	.	-1	1	Atlas-SNP
ZBTB43	23099	hgsc.bcm.edu	37	9	129596183	129596183	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001135776	exon2	c.G1395A	p.E465E	AACTGAGGCTAAC	.	143.0	58.0	155.0	0.0	.	.	.	Atlas-SNP
MCOLN1	57192	hgsc.bcm.edu	37	19	7593728	7593728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020533	exon9	c.C1006T	p.R336W	ATGTGGCGGCAGC	.	225.0	10.0	181.0	0.0	.	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	37	2	61566736	61566736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_014709	exon17	c.A2581G	p.T861A	ACAAAGTATTTCC	.	531.0	68.0	570.0	0.0	.	.	.	Atlas-SNP
LTBP3	4054	hgsc.bcm.edu	37	11	65310634	65310634	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001130144	exon18	c.C2538T	p.G846G	GTAGGAGCCATTG	.	126.0	8.0	106.0	0.0	.	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	37	6	129204396	129204396	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000426	exon1	c.G6A	p.P2P	GATGCCGGGAGCC	.	59.0	8.0	40.0	0.0	.	.	.	Atlas-SNP
CIRH1A	84916	hgsc.bcm.edu	37	16	69177275	69177275	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_032830	exon6	c.T721A	p.S241T	GTGCAGTCCATTG	.	95.0	10.0	135.0	0.0	.	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	37	7	82455963	82455963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_014510	exon18	c.C14357T	p.T4786I	TCCAGTGTTTTCT	.	83.0	9.0	120.0	0.0	.	.	.	Atlas-SNP
SETD5	55209	hgsc.bcm.edu	37	3	9495475	9495475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	SETD5_ENST00000402198,NS,carcinoma,+1,2	SETD5_ENST00000402198	NM_001080517	exon17	c.C2399A	p.P800H	CTGTACCCCAAGA	.	245.0	11.0	236.0	0.0	.	+1	2	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235872530	235872530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000081	exon44	c.G10004A	p.R3335H	AAAAGACGAGGAT	.	210.0	27.0	268.0	0.0	.	.	.	Atlas-SNP
HIST1H2BF	8343	hgsc.bcm.edu	37	6	26200084	26200084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_003522	exon1	c.C298T	p.R100C	GCCGTACGCCTGC	.	86.0	5.0	75.0	0.0	.	.	.	Atlas-SNP
PCDHGA4	56111	hgsc.bcm.edu	37	5	140735836	140735836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_018917	exon1	c.C1069G	p.Q357E	TCAGTCCAGGAAT	.	73.0	12.0	114.0	0.0	.	.	.	Atlas-SNP
GEMIN5	25929	hgsc.bcm.edu	37	5	154280995	154280995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_015465	exon21	c.G2918A	p.C973Y	TGAAAACACAGCT	.	157.0	19.0	222.0	0.0	.	.	.	Atlas-SNP
MAGEB4	4115	hgsc.bcm.edu	37	X	30261215	30261215	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_002367	exon1	c.T963C	p.V321V	CAGAGTTGCAGCC	.	107.0	14.0	84.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45216115	45216115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.A1712T	p.N571I	GGCGAATTTTTAT	.	74.0	4.0	54.0	0.0	.	0	2	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3889549	3889549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_033225	exon4	c.T488C	p.I163T	TCTCCTATGTTGA	.	104.0	6.0	171.0	0.0	.	.	.	Atlas-SNP
APOA2	336	hgsc.bcm.edu	37	1	161192313	161192313	+	Splice_Site	SNP	C	C	T	rs76162486	bycluster	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001643	exon5	c.186-1G>A	.	TAAGACCTGGATA	.	161.0	8.0	196.0	0.0	.	.	.	Atlas-SNP
SH2B3	10019	hgsc.bcm.edu	37	12	111886037	111886037	+	Silent	SNP	G	G	T	rs369151728	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	SH2B3,rectum,carcinoma,0,1	SH2B3	NM_005475	exon8	c.G1659T	p.S553S	GGACTCGGACTAC	.	71.0	3.0	112.0	0.0	.	0	1	Atlas-SNP
P2RY13	53829	hgsc.bcm.edu	37	3	151045875	151045875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_176894	exon2	c.A969C	p.K323N	TGTGAATTTTTTA	.	99.0	21.0	165.0	0.0	.	.	.	Atlas-SNP
DNAJB7	150353	hgsc.bcm.edu	37	22	41257722	41257722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_145174	exon1	c.C277A	p.P93T	CATCTGGCTTATG	.	159.0	16.0	163.0	0.0	.	.	.	Atlas-SNP
EPS8L3	79574	hgsc.bcm.edu	37	1	110300123	110300123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_139053	exon11	c.C952T	p.L318F	TGAAGAGGATGTG	.	119.0	11.0	123.0	0.0	.	.	.	Atlas-SNP
CLN3	1201	hgsc.bcm.edu	37	16	28488916	28488916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001042432	exon16	c.G1238A	p.C413Y	GAGATGCAGGTGG	.	79.0	5.0	113.0	0.0	.	.	.	Atlas-SNP
