Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ARID5B	84159	hgsc.bcm.edu	37	10	63700112	63700118	+	Frame_Shift_Del	DEL	AACCCTA	AACCCTA	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	AACCCTA	AACCCTA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ARID5B	NM_032199	exon3	c.446_452del	p.149_151del	.	.	81.0	31.0	142.0	0.0	.	125	.	Pindel,Atlas-Indel
STC1	6781	hgsc.bcm.edu	37	8	23702390	23702398	+	In_Frame_Del	DEL	TGTTGAAGT	TGTTGAAGT	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	TGTTGAAGT	TGTTGAAGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	STC1	NM_003155	exon4	c.630_638del	p.210_213del	.	.	180.0	21.0	230.0	0.0	.	49	.	Atlas-Indel
STC1	6781	hgsc.bcm.edu	37	8	23702401	23702406	+	In_Frame_Del	DEL	GCTCGT	GCTCGT	-	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	GCTCGT	GCTCGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	STC1	NM_003155	exon4	c.622_627del	p.208_209del	.	.	180.0	21.0	226.0	0.0	.	49	.	Atlas-Indel
SSC5D	284297	hgsc.bcm.edu	37	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001144950	exon14	c.C3973A	p.P1325T	CCTCACCCCACAA	.	92.0	15.0	100.0	0.0	.	.	.	Atlas-SNP
SPRED2	200734	hgsc.bcm.edu	37	2	65571938	65571938	+	Missense_Mutation	SNP	C	C	T	rs201064965		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	SPRED2,NS,carcinoma,+1,1	SPRED2	NM_181784	exon2	c.G119A	p.R40H	CCGACGCGACTGA	.	151.0	8.0	127.0	0.0	.	+1	1	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	37	20	40033237	40033237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_032221	exon37	c.A8144G	p.N2715S	TTCTAATTGGTGT	.	154.0	37.0	139.0	0.0	.	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30954618	30954618	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	MUC21,rectum,carcinoma,0,2	MUC21	NM_001010909	exon2	c.T666C	p.A222A	TGGGGCTGGCACA	.	67.0	4.0	52.0	1.0	.	0	2	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	37	8	100479794	100479794	+	Missense_Mutation	SNP	C	C	G	rs140353201	alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_152564	exon24	c.C3598G	p.R1200G	GATACACGACATT	.	190.0	29.0	168.0	0.0	.	.	.	Atlas-SNP
PRSS3	5646	hgsc.bcm.edu	37	9	33797828	33797828	+	Missense_Mutation	SNP	C	C	T	rs143209949	bycluster;byfrequency	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	PRSS3_ENST00000361005,NS,carcinoma,-1,2	PRSS3_ENST00000361005	NM_007343	exon3	c.C373T	p.R125C	ATCAGCCGCATCC	.	103.0	6.0	121.0	1.0	0.001	-1	2	Atlas-SNP
MIR137HG	400765	hgsc.bcm.edu	37	1	98511786	98511786	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	TGCCGCCGCCGCC	.	71.0	5.0	80.0	0.0	.	.	.	Atlas-SNP
OR2A2	442361	hgsc.bcm.edu	37	7	143806941	143806941	+	Missense_Mutation	SNP	G	G	C	rs139387901	alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	OR2A2,upper_arm,malignant_melanoma,0,1	OR2A2	NM_001005480	exon1	c.G266C	p.R89T	AGAAAAGAACCAT	.	245.0	42.0	226.0	0.0	.	0	1	Atlas-SNP
RGPD8	727851	hgsc.bcm.edu	37	2	113147115	113147115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	RGPD8_ENST00000302558,NS,carcinoma,+1,2	RGPD8_ENST00000302558	NM_001164463	exon20	c.T3407G	p.F1136C	TCAGAGAAATCAC	.	40.0	6.0	33.0	0.0	.	+1	2	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	37	12	123057483	123057483	+	Splice_Site	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_014708	exon25	c.2020-1G>A	.	GTTTTAGAAAGAT	.	85.0	26.0	81.0	0.0	.	.	.	Atlas-SNP
CHST2	9435	hgsc.bcm.edu	37	3	142839860	142839860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_004267	exon2	c.C202T	p.L68F	CTGGTGCTCACTA	.	95.0	16.0	76.0	0.0	.	.	.	Atlas-SNP
ILVBL	10994	hgsc.bcm.edu	37	19	15230298	15230298	+	Missense_Mutation	SNP	C	C	T	rs149721143		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006844	exon8	c.G845A	p.R282Q	TTGGCCCGGCTCA	.	209.0	11.0	237.0	0.0	0.000	.	.	Atlas-SNP
PPP1R36	145376	hgsc.bcm.edu	37	14	65054073	65054073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_172365	exon10	c.G873A	p.M291I	ACGCATGACTTTT	.	101.0	26.0	68.0	0.0	.	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	37	4	183609373	183609373	+	Missense_Mutation	SNP	G	G	A	rs147392905	bycluster;by1000genomes	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001080477	exon11	c.G2090A	p.R697H	CGTGTCGCTGTGA	.	70.0	23.0	84.0	0.0	0.001	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	CDC27_ENST00000531206,NS,carcinoma,0,10	CDC27_ENST00000531206	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	56.0	6.0	46.0	1.0	.	0	10	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	37	7	12644158	12644158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001112706	exon4	c.G536C	p.G179A	GGTGTGGTTCCTC	.	138.0	22.0	97.0	0.0	.	.	.	Atlas-SNP
LRBA	987	hgsc.bcm.edu	37	4	151829586	151829586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006726	exon11	c.A1393C	p.S465R	TTGCACTTTGGAT	.	219.0	73.0	245.0	0.0	.	.	.	Atlas-SNP
SLC52A2	79581	hgsc.bcm.edu	37	8	145583775	145583775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_024531	exon3	c.C623A	p.A208D	CTTCAGCTGCTGC	.	115.0	29.0	63.0	0.0	.	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	37	6	32023843	32023843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_019105	exon24	c.C8252T	p.S2751L	CTCAGCGAGTCAG	.	77.0	19.0	67.0	0.0	.	.	.	Atlas-SNP
YKT6	10652	hgsc.bcm.edu	37	7	44240804	44240804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006555	exon1	c.G70A	p.D24N	GCATACGATGTGT	.	230.0	54.0	167.0	0.0	.	.	.	Atlas-SNP
MYCN	4613	hgsc.bcm.edu	37	2	16085979	16085979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_005378	exon3	c.C1155A	p.N385K	CAGAAACCACAAC	.	126.0	31.0	125.0	0.0	.	.	.	Atlas-SNP
