Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
DDX3X	1654	hgsc.bcm.edu	37	X	41204800	41204801	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	DDX3X	NM_001356	exon12	c.1314_1315insG	p.T438fs	.	.	214.0	30.0	226.0	0.0	.	138	.	Atlas-Indel
KRTAP5-2	440021	hgsc.bcm.edu	37	11	1619255	1619255	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KRTAP5-2,NS,malignant_melanoma,0,1	KRTAP5-2	NM_001004325	exon1	c.A226T	p.T76S	AGCTGGTGCAGGA	.	49.0	3.0	77.0	0.0	.	0	1	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678918	100678918	+	Silent	SNP	G	G	A	rs200627718	byfrequency	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	MUC17,colon,carcinoma,+1,1	MUC17	NM_001040105	exon3	c.G4221A	p.P1407P	CACGCCGGTAGTC	.	86.0	5.0	85.0	1.0	0.002	+1	1	Atlas-SNP
PSG3	5671	hgsc.bcm.edu	37	19	43236936	43236936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	PSG3,bladder,carcinoma,0,1	PSG3	NM_021016	exon3	c.C709A	p.P237T	ACTCACGGAGGAG	.	47.0	2.0	39.0	0.0	.	0	1	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55593603	55593603	+	Missense_Mutation	SNP	T	T	G	rs121913235	bycluster	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KIT,NS,germ_cell_tumour,0,64	KIT	NM_000222	exon11	c.T1669G	p.W557G	GTACAGTGGAAGG	.	115.0	11.0	123.0	0.0	.	0	64	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	37	11	113076296	113076296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001242608	exon5	c.A398G	p.E133G	AGGGGGAAGATGC	.	115.0	5.0	137.0	0.0	.	.	.	Atlas-SNP
ZFX	7543	hgsc.bcm.edu	37	X	24228773	24228773	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_003410	exon10	c.C1698T	p.H566H	AAAGCACATGAGA	.	151.0	20.0	166.0	0.0	.	.	.	Atlas-SNP
KRTAP10-12	386685	hgsc.bcm.edu	37	21	46117576	46117576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KRTAP10-12,rectum,carcinoma,0,2	KRTAP10-12	NM_198699	exon1	c.C460T	p.P154S	TGTGTGCCCGTCT	.	50.0	4.0	30.0	0.0	.	0	2	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	37	6	170175417	170175417	+	Nonsense_Mutation	SNP	G	G	T	rs376417698	alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	C6orf70,NS,carcinoma,0,1	C6orf70	NM_018341	exon14	c.G1369T	p.E457X	TTCCCCGAAGAAC	.	52.0	3.0	58.0	0.0	.	0	1	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	37	7	150671831	150671831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000238	exon2	c.G275A	p.R92H	ACTTTGCGCTCCT	.	121.0	5.0	123.0	0.0	.	.	.	Atlas-SNP
PURG	29942	hgsc.bcm.edu	37	8	30889696	30889696	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	PURG_ENST00000475541,colon,carcinoma,-2,2	PURG_ENST00000475541	NM_013357	exon1	c.C603A	p.T201T	CATCATGGTTTGT	.	114.0	8.0	117.0	0.0	.	-2	2	Atlas-SNP
tRNA-Glu	0	hgsc.bcm.edu	37	MT	14698	14698	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	AACCACGACCAAT	.	65.0	6.0	186.0	0.0	.	.	.	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	37	3	113376101	113376101	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001009899	exon7	c.A4428G	p.Q1476Q	TTGTTGTTGTTGC	.	78.0	7.0	60.0	0.0	.	.	.	Atlas-SNP
