Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KIAA0391	9692	hgsc.bcm.edu	37	14	35593060	35593060	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_014672	exon2	c.C609G	p.A203A	GAAAGCCAGATAT	.	138.0	12.0	114.0	0.0	.	.	.	Atlas-SNP
DPYD-AS1	100873932	hgsc.bcm.edu	37	1	97700346	97700346	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GTCACATAACTTA	.	66.0	13.0	91.0	0.0	.	.	.	Atlas-SNP
UBE2M	9040	hgsc.bcm.edu	37	19	59067702	59067702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_003969	exon5	c.G392A	p.G131D	TGCAGGCCATAAA	.	118.0	11.0	115.0	0.0	.	.	.	Atlas-SNP
NT5C3A	0	hgsc.bcm.edu	37	7	33102326	33102326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001002010	exon1	c.G7C	p.A3P	ACGGGGCCCTCAT	.	108.0	7.0	107.0	0.0	.	.	.	Atlas-SNP
CYP1A1	1543	hgsc.bcm.edu	37	15	75012969	75012969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000499	exon7	c.T1400C	p.V467A	AGAAAGACCTCCC	.	91.0	4.0	60.0	0.0	.	.	.	Atlas-SNP
KDM5A	5927	hgsc.bcm.edu	37	12	459828	459828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KDM5A_ENST00000399788,NS,carcinoma,+1,4	KDM5A_ENST00000399788	NM_001042603	exon10	c.C1267T	p.P423S	TCACCGGAAATCC	.	246.0	14.0	183.0	0.0	.	+1	4	Atlas-SNP
NRAS	4893	hgsc.bcm.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	bycluster;byfrequency;byhapmap	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG	.	183.0	14.0	103.0	0.0	.	-1	2068	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274343	39274343	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KRTAP4-11,NS,malignant_melanoma,0,2	KRTAP4-11	NM_033059	exon1	c.T225C	p.C75C	GGGGCGACAGCAG	.	47.0	2.0	41.0	2.0	.	0	2	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001162895	exon3	c.G226A	p.D76N	CTTCATCCTTCTT	.	132.0	10.0	92.0	0.0	.	.	.	Atlas-SNP
KRT8	3856	hgsc.bcm.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KRT8,colon,carcinoma,0,2	KRT8	NM_001256282	exon2	c.C151T	p.R51C	AGGAGCGGCTGCT	.	45.0	4.0	38.0	2.0	0.055	0	2	Atlas-SNP
XPO6	23214	hgsc.bcm.edu	37	16	28167671	28167671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	XPO6,NS,carcinoma,-1,1	XPO6	NM_015171	exon7	c.T821C	p.I274T	TGGAAGATGGTGG	.	94.0	4.0	106.0	0.0	.	-1	1	Atlas-SNP
SMC3	9126	hgsc.bcm.edu	37	10	112361739	112361739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005445	exon25	c.G2908C	p.E970Q	AAACTTGAGCAGT	.	170.0	13.0	140.0	0.0	.	.	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	37	17	29162012	29162012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ATAD5,NS,carcinoma,-2,1	ATAD5	NM_024857	exon2	c.A913G	p.I305V	GGTTATATAAGTG	.	252.0	11.0	226.0	0.0	.	-2	1	Atlas-SNP
ERICH1	157697	hgsc.bcm.edu	37	8	623373	623373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ERICH1,NS,carcinoma,+1,1	ERICH1	NM_207332	exon4	c.G979A	p.E327K	CTTCCTCGCTGGC	.	170.0	25.0	134.0	0.0	.	+1	1	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093295	1093295	+	Missense_Mutation	SNP	C	C	T	rs200145328	alternate_allele	TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	MUC2_ENST00000441003,rectum,carcinoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.C5114T	p.T1705I	CCACCACTACGGT	.	40.0	3.0	29.0	0.0	.	0	2	Atlas-SNP
ARMC3	219681	hgsc.bcm.edu	37	10	23290962	23290962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_173081	exon12	c.G1540A	p.A514T	CTGACGGCCAATG	.	117.0	14.0	113.0	0.0	.	.	.	Atlas-SNP
EPB42	2038	hgsc.bcm.edu	37	15	43500484	43500484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000119	exon8	c.C1109A	p.P370H	CCCTGGGGCAAGG	.	88.0	4.0	96.0	0.0	.	.	.	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	37	1	35836147	35836147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005095	exon7	c.C1100T	p.T367I	GCTCCACACTGTG	.	85.0	6.0	97.0	0.0	.	.	.	Atlas-SNP
AGRN	375790	hgsc.bcm.edu	37	1	977425	977425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAKO-05A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6158162d-f33a-4e39-9246-b19175ac7ba7	ca26dacd-984e-46b3-ad5e-671c3c639fbf	AGRN,NS,carcinoma,0,1	AGRN	NM_198576	exon7	c.G1267A	p.G423R	TGTGACGGGGCCT	.	37.0	2.0	23.0	0.0	.	0	1	Atlas-SNP
