Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
LARP7	51574	hgsc.bcm.edu	37	4	113568112	113568113	+	Splice_Site	INS	-	-	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	LARP7	NM_016648	exon5	c.552+1->T	.	.	.	116.0	35.0	146.0	0.0	.	54	.	Atlas-Indel
CRB1	23418	hgsc.bcm.edu	37	1	197390687	197390687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001257966	exon6	c.G1729T	p.A577S	GCAGAGGCTGTGA	.	87.0	13.0	86.0	0.0	.	.	.	Atlas-SNP
NOV	4856	hgsc.bcm.edu	37	8	120435213	120435213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_002514	exon5	c.T915G	p.N305K	CCACAATACCAAA	.	215.0	34.0	132.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	CDC27_ENST00000531206,NS,carcinoma,0,10	CDC27_ENST00000531206	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	38.0	3.0	30.0	0.0	.	0	10	Atlas-SNP
FRG1B	284802	hgsc.bcm.edu	37	20	29628458	29628458	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	GTGGTGTTTCAAA	.	69.0	5.0	73.0	0.0	.	.	.	Atlas-SNP
ACSM2A	123876	hgsc.bcm.edu	37	16	20471599	20471599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001010845	exon3	c.G163A	p.A55T	CACTGGGCTGACA	.	96.0	28.0	132.0	0.0	.	.	.	Atlas-SNP
USP5	8078	hgsc.bcm.edu	37	12	6965261	6965261	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_003481	exon4	c.C385T	p.L129L	GATTACCTGGAGA	.	263.0	38.0	100.0	0.0	.	.	.	Atlas-SNP
TEX13A	56157	hgsc.bcm.edu	37	X	104463847	104463847	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_031274	exon5	c.G1029A	p.L343L	AGACCACAGGCTA	.	116.0	35.0	87.0	0.0	.	.	.	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	37	3	197880167	197880167	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001145248	exon2	c.G246A	p.Q82Q	GCAGCAGCAGCAA	.	327.0	17.0	405.0	0.0	.	.	.	Atlas-SNP
KLHDC8A	55220	hgsc.bcm.edu	37	1	205307669	205307669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_018203	exon5	c.T813G	p.F271L	AGCCACAAAATCT	.	84.0	27.0	82.0	0.0	.	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840	bycluster	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	34.0	7.0	13.0	0.0	0.500	.	.	Atlas-SNP
RNR1	6052	hgsc.bcm.edu	37	MT	988	988	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	ACCTGAGTTGTAA	.	36.0	32.0	43.0	0.0	.	.	.	Atlas-SNP
CLK1	1195	hgsc.bcm.edu	37	2	201721420	201721420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001162407	exon9	c.C1168T	p.P390S	CTTCAGGTGCTCT	.	254.0	72.0	283.0	0.0	.	.	.	Atlas-SNP
HMBS	3145	hgsc.bcm.edu	37	11	118958997	118958997	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	HMBS,NS,carcinoma,+2,1	HMBS	NM_000190	exon2	c.C66T	p.R22R	GATTCGCGTGGGT	.	63.0	13.0	68.0	0.0	.	+2	1	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235904732	235904732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_000081	exon31	c.C8348T	p.P2783L	AGGGATGGGCTGA	.	95.0	30.0	90.0	0.0	.	.	.	Atlas-SNP
HSD17B4	3295	hgsc.bcm.edu	37	5	118788317	118788317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_000414	exon1	c.G47T	p.G16V	TCACCGGCGCGGG	.	80.0	5.0	68.0	0.0	.	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129922	175129922	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001162895	exon3	c.T228G	p.D76E	TTCTTCATCCTTC	.	85.0	6.0	88.0	0.0	.	.	.	Atlas-SNP
NDUFA13	51079	hgsc.bcm.edu	37	19	19638552	19638552	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_015965	exon4	c.C288A	p.I96I	GGCCATCATCATG	.	67.0	23.0	53.0	0.0	.	.	.	Atlas-SNP
POTEA	340441	hgsc.bcm.edu	37	8	43152474	43152474	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001005365	exon3	c.C460G	p.H154D	CTACAACATGGCA	.	176.0	40.0	165.0	0.0	.	.	.	Atlas-SNP
COX10-AS1	100874058	hgsc.bcm.edu	37	17	13972737	13972737	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	AGCCCGCCACACT	.	18.0	4.0	9.0	0.0	.	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001162895	exon3	c.G226A	p.D76N	CTTCATCCTTCTT	.	88.0	10.0	88.0	0.0	.	.	.	Atlas-SNP
KLHL13	90293	hgsc.bcm.edu	37	X	117043475	117043475	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001168299	exon6	c.C1164T	p.A388A	AATGACGGCGATG	.	153.0	60.0	108.0	0.0	.	.	.	Atlas-SNP
RAC1	5879	hgsc.bcm.edu	37	7	6426908	6426908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_006908	exon2	c.C101G	p.P34R	ATATCCCTACTGT	.	108.0	17.0	105.0	0.0	.	.	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	37	8	104831755	104831755	+	Missense_Mutation	SNP	G	G	A	rs377178152		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	RIMS2_ENST00000507740,NS,carcinoma,0,2	RIMS2_ENST00000507740	NM_014677	exon1	c.G20A	p.R7H	CATTGCGCCAGGT	.	84.0	7.0	57.0	0.0	.	0	2	Atlas-SNP
TRIM37	4591	hgsc.bcm.edu	37	17	57126703	57126703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_015294	exon15	c.C1366G	p.P456A	TATCTGGTGGTGA	.	116.0	23.0	115.0	0.0	.	.	.	Atlas-SNP
FRG1B	284802	hgsc.bcm.edu	37	20	29628464	29628464	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	TTTCAAATAGACT	.	67.0	4.0	70.0	0.0	.	.	.	Atlas-SNP
TACSTD2	4070	hgsc.bcm.edu	37	1	59042191	59042191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_002353	exon1	c.C638T	p.A213V	CCGGCGGCCTTCT	.	126.0	33.0	78.0	0.0	.	.	.	Atlas-SNP
CCT8L2	150160	hgsc.bcm.edu	37	22	17072477	17072477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_014406	exon1	c.G964C	p.E322Q	TGATCTCCATCCA	.	130.0	31.0	117.0	0.0	.	.	.	Atlas-SNP
GGT8P	645367	hgsc.bcm.edu	37	2	91964414	91964414	+	RNA	SNP	C	C	A	rs141248674		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	.	.	.	.	ATCTATCTATATC	.	12.0	4.0	19.0	0.0	.	.	.	Atlas-SNP
CLK3	1198	hgsc.bcm.edu	37	15	74914482	74914482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001130028	exon4	c.C835T	p.R279C	AGTAAGCGCAGCA	.	84.0	18.0	95.0	0.0	.	.	.	Atlas-SNP
PCDHB18	54660	hgsc.bcm.edu	37	5	140615614	140615614	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	PCDHB18,NS,carcinoma,0,2	PCDHB18	.	.	.	.	GGACCCGCACCTG	.	49.0	6.0	37.0	1.0	.	0	2	Atlas-SNP
CHMP2A	27243	hgsc.bcm.edu	37	19	59063125	59063125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_198426	exon6	c.G560T	p.G187V	AGCGAGCCCCCAG	.	56.0	17.0	90.0	0.0	.	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	37	2	1677521	1677521	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_012293	exon9	c.C912A	p.I304I	GTTCTGGATCATC	.	98.0	4.0	128.0	0.0	.	.	.	Atlas-SNP
