Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
LAMB3	3914	hgsc.bcm.edu	37	1	209799360	209799361	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	LAMB3	NM_000228	exon14	c.1609_1610del	p.537_537del	.	.	111.0	25.0	95.0	0.0	.	136	.	Pindel,Atlas-Indel
MEGF6	1953	hgsc.bcm.edu	37	1	3440791	3440791	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001409	exon5	c.C501A	p.T167T	GTTGTGGGTTCGG	.	100.0	5.0	129.0	0.0	.	.	.	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	37	7	20406739	20406739	+	Silent	SNP	T	T	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002214	exon3	c.T318G	p.V106V	GCATGTTATAATA	.	119.0	29.0	77.0	0.0	.	.	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	37	17	29164229	29164229	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_024857	exon3	c.A1973C	p.K658T	GAATGAAATTCAC	.	435.0	90.0	248.0	0.0	.	.	.	Atlas-SNP
SEMA4B	10509	hgsc.bcm.edu	37	15	90764683	90764683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_020210	exon7	c.A680G	p.K227R	CCACCAAGACCGA	.	95.0	4.0	140.0	0.0	.	.	.	Atlas-SNP
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254149	39254149	+	Missense_Mutation	SNP	G	G	C	rs201246375		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_031960	exon1	c.C188G	p.T63S	CAGCAGGTGGGCT	.	18.0	4.0	18.0	0.0	.	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	37	10	129901783	129901783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002417	exon13	c.C8321T	p.P2774L	GGAGCCGGTGTCT	.	133.0	9.0	156.0	0.0	.	.	.	Atlas-SNP
MC1R	4157	hgsc.bcm.edu	37	16	89985992	89985992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002386	exon1	c.G326A	p.R109Q	TGGCCCGGGCTGC	.	51.0	10.0	58.0	0.0	.	.	.	Atlas-SNP
KLF13	51621	hgsc.bcm.edu	37	15	31619961	31619961	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_015995	exon1	c.G546C	p.S182S	ATCTTCGCACCTC	.	66.0	17.0	80.0	0.0	.	.	.	Atlas-SNP
LRRC46	90506	hgsc.bcm.edu	37	17	45914165	45914165	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_033413	exon8	c.G645A	p.R215R	GCACCGGCAACAG	.	80.0	24.0	67.0	0.0	.	.	.	Atlas-SNP
NLRP6	171389	hgsc.bcm.edu	37	11	281495	281495	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_138329	exon4	c.C1761T	p.P587P	CTGCCCCGGAGTG	.	50.0	12.0	51.0	0.0	.	.	.	Atlas-SNP
PEMT	10400	hgsc.bcm.edu	37	17	17480330	17480330	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001267552	exon2	c.C108T	p.C36C	CATAACGCAGAAG	.	52.0	16.0	52.0	0.0	.	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	37	11	121028809	121028809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_005422	exon13	c.A4565G	p.D1522G	TGCCCGACATCTC	.	88.0	66.0	115.0	0.0	.	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	37	22	40055123	40055123	+	Splice_Site	SNP	T	T	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_021096	exon12	c.2330+2T>G	.	TTCAGGTGAGCCT	.	53.0	6.0	51.0	0.0	.	.	.	Atlas-SNP
OSCP1	127700	hgsc.bcm.edu	37	1	36888403	36888403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_145047	exon6	c.T715A	p.Y239N	CTCCATAAAGTTC	.	106.0	21.0	120.0	0.0	.	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57600263	57600263	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002332	exon76	c.G11598A	p.E3866E	CTCTGAGTACCAG	.	49.0	27.0	62.0	0.0	.	.	.	Atlas-SNP
PABPC1	26986	hgsc.bcm.edu	37	8	101721953	101721953	+	Missense_Mutation	SNP	T	T	A	rs370158190	alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	PABPC1,NS,carcinoma,+2,1	PABPC1	NM_002568	exon8	c.A979T	p.M327L	CCTCCATCATAAC	.	74.0	6.0	64.0	1.0	.	+2	1	Atlas-SNP
ATP8A1	10396	hgsc.bcm.edu	37	4	42524317	42524317	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001105529	exon22	c.1763-1G>T	.	TTAACCCTGAAAA	.	65.0	5.0	71.0	0.0	.	.	.	Atlas-SNP
KRT4	3851	hgsc.bcm.edu	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	KRT4,rectum,carcinoma,0,3	KRT4	NM_002272	exon1	c.C237T	p.G79G	GCCAAAGCCTCCA	.	130.0	11.0	122.0	1.0	.	0	3	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152381766	152381766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001271208	exon152	c.G22288A	p.V7430I	CCTTGACAAACTT	.	109.0	28.0	112.0	0.0	.	.	.	Atlas-SNP
RPS6KA6	27330	hgsc.bcm.edu	37	X	83361424	83361424	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_014496	exon15	c.T1314C	p.S438S	GCAAACAGAGTAG	.	118.0	54.0	97.0	0.0	.	.	.	Atlas-SNP
POR	5447	hgsc.bcm.edu	37	7	75615073	75615073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_000941	exon13	c.C1575G	p.F525L	GCCCTTCAAGGCC	.	86.0	14.0	82.0	0.0	.	.	.	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	37	17	76075489	76075489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_018996	exon11	c.A3224G	p.N1075S	GTGGCAATCTGGG	.	94.0	24.0	70.0	0.0	.	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	rs199525790		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5212A	p.G1738S	CCCACCGGCACAC	.	37.0	10.0	37.0	2.0	.	0	2	Atlas-SNP
PUS7	54517	hgsc.bcm.edu	37	7	105105799	105105799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	PUS7,NS,carcinoma,+2,2	PUS7	NM_019042	exon13	c.C1588T	p.P530S	GCAAGGGCATTAC	.	87.0	17.0	61.0	0.0	.	+2	2	Atlas-SNP
YTHDF1	54915	hgsc.bcm.edu	37	20	61833918	61833918	+	Silent	SNP	G	G	A	rs368566767		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_017798	exon4	c.C1374T	p.Y458Y	GGTGCCGTAGTCC	.	90.0	4.0	84.0	0.0	.	.	.	Atlas-SNP
GPANK1	7918	hgsc.bcm.edu	37	6	31631709	31631709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001199238	exon3	c.C547T	p.L183F	CAGCGAGCTGAGC	.	54.0	25.0	71.0	0.0	.	.	.	Atlas-SNP
KRT4	3851	hgsc.bcm.edu	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele;byhapmap	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	KRT4,rectum,carcinoma,0,1	KRT4	NM_002272	exon1	c.T240C	p.F80F	AGTGCCAAAGCCT	.	129.0	13.0	121.0	0.0	.	0	1	Atlas-SNP
CPA2	1358	hgsc.bcm.edu	37	7	129919488	129919488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001869	exon9	c.G973A	p.D325N	TTAGATGACTTTG	.	150.0	6.0	115.0	0.0	.	.	.	Atlas-SNP
