Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
TNKS	8658	hgsc.bcm.edu	37	8	9623905	9623905	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	TNKS	NM_003747	exon25	c.3709delC	p.H1237fs	.	.	72.0	12.0	99.0	0.0	.	198	.	Atlas-Indel
NEFH	4744	hgsc.bcm.edu	37	22	29885584	29885585	+	In_Frame_Ins	INS	-	-	CAAGTCCCCTGAGAAGGC	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.,1	NEFH	NM_021076	exon4	c.1955_1956insCAAGTCCCCTGAGAAGGC	p.A652delinsAKSPEKA	.	.	99.0	18.0	120.0	0.0	.	178	.	Atlas-Indel
RNF216P1	441191	hgsc.bcm.edu	37	7	5024702	5024702	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	TCACCCGAAAGGT	.	87.0	15.0	83.0	0.0	.	.	.	Atlas-SNP
PDXDC1	23042	hgsc.bcm.edu	37	16	15122751	15122751	+	Silent	SNP	C	C	T	rs117411702	bycluster	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	PDXDC1,NS,carcinoma,0,3	PDXDC1	NM_015027	exon15	c.C1221T	p.A407A	TAAAGCCGTCCCA	.	98.0	4.0	60.0	1.0	0.002	0	3	Atlas-SNP
SNX20	124460	hgsc.bcm.edu	37	16	50707856	50707856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	SNX20,NS,carcinoma,+1,1	SNX20	NM_182854	exon4	c.G412T	p.V138L	ACTCCACGTCTTC	.	40.0	8.0	30.0	0.0	.	+1	1	Atlas-SNP
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	rs76607193	bycluster;byfrequency	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC	.	82.0	4.0	89.0	0.0	0.003	0	1	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	37	3	124732419	124732419	+	Silent	SNP	A	A	G	rs202026679	bycluster	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_020733	exon6	c.T2004C	p.S668S	AGAAGAAGAGGAG	.	49.0	5.0	50.0	0.0	.	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	37	1	186055461	186055461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	HMCN1,NS,carcinoma,-2,1	HMCN1	NM_031935	exon58	c.G8968A	p.G2990S	GTCTCTGGTTTTC	.	155.0	42.0	148.0	0.0	.	-2	1	Atlas-SNP
BCL2L15	440603	hgsc.bcm.edu	37	1	114429213	114429213	+	Silent	SNP	G	G	A	rs75493886	bycluster;by1000genomes	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	BCL2L15,rectum,carcinoma,-1,2	BCL2L15	NM_001010922	exon2	c.C195T	p.N65N	TTCTCCGTTGAAC	.	72.0	6.0	81.0	0.0	0.000	-1	2	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045897	7045897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	ATN1,colon,carcinoma,0,1	ATN1	NM_001007026	exon5	c.G1467C	p.Q489H	ACAGCAGCAGCAG	.	102.0	20.0	28.0	0.0	.	0	1	Atlas-SNP
PGA3	643834	hgsc.bcm.edu	37	11	60971070	60971070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001079807	exon1	c.C34A	p.L12I	GTGGCACTCTCTG	.	184.0	85.0	239.0	1.0	.	.	.	Atlas-SNP
HMMR	3161	hgsc.bcm.edu	37	5	162901165	162901165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001142556	exon10	c.T1007C	p.L336P	AAAAGCTTCAACA	.	241.0	15.0	298.0	0.0	.	.	.	Atlas-SNP
STX16-NPEPL1	100534593	hgsc.bcm.edu	37	20	57266755	57266755	+	RNA	SNP	T	T	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	CTTTTTTTTTTTT	.	31.0	6.0	15.0	0.0	.	.	.	Atlas-SNP
