Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
GSX2	170825	hgsc.bcm.edu	37	4	54968011	54968021	+	Frame_Shift_Del	DEL	GCACTACGCGC	GCACTACGCGC	-	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	GCACTACGCGC	GCACTACGCGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_133267	exon2	c.836_846del	p.279_282del	.	.	99.0	32.0	200.0	0.0	.	.	.	Pindel,Atlas-Indel
ZFYVE26	23503	hgsc.bcm.edu	37	14	68282599	68282599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_015346	exon2	c.G82A	p.E28K	CCCATTCTCCCCT	.	127.0	40.0	101.0	0.0	.	.	.	Atlas-SNP
SCG2	7857	hgsc.bcm.edu	37	2	224463779	224463779	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_003469	exon2	c.C222T	p.S74S	TGGGCTGCTTTCT	.	218.0	40.0	216.0	0.0	.	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	37	12	117657988	117657988	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001204218	exon28	c.T4164C	p.C1388C	GTCCCCACAGACG	.	64.0	19.0	60.0	0.0	.	.	.	Atlas-SNP
JUP	3728	hgsc.bcm.edu	37	17	39912437	39912437	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_021991	exon13	c.C2076T	p.P692P	TCCATAGGGCTCA	.	93.0	31.0	105.0	0.0	.	.	.	Atlas-SNP
LCA5L	150082	hgsc.bcm.edu	37	21	40792705	40792705	+	Missense_Mutation	SNP	C	C	T	rs370952139		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_152505	exon6	c.G902A	p.R301Q	GTCTTCCGAGTCT	.	142.0	28.0	129.0	0.0	.	.	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	37	1	214788200	214788200	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_016343	exon3	c.C188G	p.T63R	AGGGTACAAACCT	.	271.0	68.0	302.0	0.0	.	.	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	37	3	122645325	122645325	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	SEMA5B_ENST00000451055,NS,malignant_melanoma,-2,3	SEMA5B_ENST00000451055	NM_001256347	exon9	c.C1212T	p.G404G	GACCTCGCCCGGG	.	125.0	34.0	133.0	0.0	.	-2	3	Atlas-SNP
C6orf123	26238	hgsc.bcm.edu	37	6	168191838	168191838	+	RNA	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	CATCAGCCCATCA	.	19.0	7.0	27.0	0.0	.	.	.	Atlas-SNP
TGIF1	7050	hgsc.bcm.edu	37	18	3452011	3452011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_170695	exon1	c.G34A	p.V12M	GCCGGGGTGGGCT	.	79.0	39.0	113.0	0.0	.	.	.	Atlas-SNP
IL18RAP	8807	hgsc.bcm.edu	37	2	103061722	103061722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	IL18RAP,NS,carcinoma,0,2	IL18RAP	NM_003853	exon9	c.C994T	p.R332C	GATCTTCGCAGGA	.	118.0	27.0	165.0	0.0	.	0	2	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	37	5	141059697	141059697	+	Silent	SNP	G	G	A	rs200318347	byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_022481	exon2	c.C357T	p.A119A	CCCGAGGGCTGGG	.	39.0	18.0	56.0	0.0	0.005	.	.	Atlas-SNP
TMEM180	79847	hgsc.bcm.edu	37	10	104229774	104229774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024789	exon4	c.C193T	p.L65F	AACAGCCTCAATG	.	66.0	19.0	123.0	0.0	.	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65242042	65242042	+	Missense_Mutation	SNP	G	G	A	rs377634587		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	SPTB_ENST00000542895,colon,carcinoma,+1,3	SPTB_ENST00000542895	NM_001024858	exon22	c.C4643T	p.A1548V	ATCTCCGCCGCCT	.	97.0	4.0	82.0	0.0	.	+1	3	Atlas-SNP
PRICKLE3	4007	hgsc.bcm.edu	37	X	49033372	49033372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006150	exon8	c.C1135A	p.R379S	TGCGGCGGCTCGG	.	99.0	4.0	66.0	0.0	.	.	.	Atlas-SNP
SARNP	84324	hgsc.bcm.edu	37	12	56154395	56154395	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_033082	exon10	c.G531A	p.R177R	CTCCTTCCTCTTT	.	166.0	38.0	133.0	0.0	.	.	.	Atlas-SNP
CDK7	1022	hgsc.bcm.edu	37	5	68530860	68530860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001799	exon1	c.G58A	p.E20K	CTTGGGGAGGGAC	.	127.0	47.0	198.0	0.0	.	.	.	Atlas-SNP
PVRIG	79037	hgsc.bcm.edu	37	7	99818416	99818416	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024070	exon5	c.C630G	p.S210R	CACCAGCCCCCAG	.	38.0	7.0	41.0	0.0	.	.	.	Atlas-SNP
CYP2C19	1557	hgsc.bcm.edu	37	10	96580387	96580387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	CYP2C19,NS,carcinoma,+1,2	CYP2C19	NM_000769	exon6	c.G954T	p.E318D	CCCAGAGGTCACA	.	45.0	3.0	73.0	0.0	.	+1	2	Atlas-SNP
PRMT8	56341	hgsc.bcm.edu	37	12	3701426	3701426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	PRMT8_ENST00000452611,NS,carcinoma,-2,2	PRMT8_ENST00000452611	NM_019854	exon9	c.C1009A	p.Q337K	TGGAAGCAGACCG	.	110.0	17.0	57.0	0.0	.	-2	2	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	37	15	42143126	42143126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_016642	exon66	c.G10742A	p.G3581E	TCTGCCCCACTGG	.	101.0	38.0	158.0	0.0	.	.	.	Atlas-SNP
POLR3B	55703	hgsc.bcm.edu	37	12	106857290	106857290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_018082	exon23	c.G2605C	p.V869L	GAAAAAGTGATGA	.	218.0	47.0	191.0	0.0	.	.	.	Atlas-SNP
IL9R	3581	hgsc.bcm.edu	37	X	155239821	155239821	+	Missense_Mutation	SNP	G	G	A	rs140822242	bycluster;byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_002186	exon9	c.G1313A	p.S438N	GCAGCAGCAACAA	.	161.0	8.0	300.0	0.0	0.010	.	.	Atlas-SNP
LRGUK	136332	hgsc.bcm.edu	37	7	133812184	133812184	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	LRGUK,NS,carcinoma,-1,1	LRGUK	NM_144648	exon1	c.A64T	p.R22X	TTGGGCAGATCCC	.	199.0	30.0	131.0	0.0	.	-1	1	Atlas-SNP
SLC25A51P1	442229	hgsc.bcm.edu	37	6	66498776	66498776	+	RNA	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	CCAACACTTATCA	.	75.0	23.0	100.0	0.0	.	.	.	Atlas-SNP
PPP1R9A	55607	hgsc.bcm.edu	37	7	94539755	94539755	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_017650	exon2	c.T330C	p.D110D	AACAGATGGCTCA	.	207.0	100.0	219.0	0.0	.	.	.	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	37	12	53045597	53045597	+	Silent	SNP	A	A	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_000423	exon1	c.T330A	p.G110G	ACCACCACCACTG	.	222.0	13.0	192.0	0.0	.	.	.	Atlas-SNP
CALCOCO1	57658	hgsc.bcm.edu	37	12	54108460	54108460	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_020898	exon11	c.T1404C	p.S468S	CCGCTTACTTTCT	.	88.0	19.0	78.0	0.0	.	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	37	6	90486377	90486377	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014611	exon12	c.C1763G	p.T588R	TTGCTTGTATGCT	.	94.0	30.0	80.0	0.0	.	.	.	Atlas-SNP
MGAT3	4248	hgsc.bcm.edu	37	22	39884487	39884487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_002409	exon2	c.A1135T	p.I379F	GACGGCATCCGCC	.	39.0	15.0	65.0	0.0	.	.	.	Atlas-SNP
RPLP0	6175	hgsc.bcm.edu	37	12	120637146	120637146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_053275	exon3	c.G197C	p.R66P	TGCCCTCGGATGG	.	134.0	27.0	98.0	0.0	.	.	.	Atlas-SNP
ZBTB10	65986	hgsc.bcm.edu	37	8	81399795	81399795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_023929	exon1	c.C750G	p.F250L	CTCCTTCCAGACC	.	89.0	20.0	81.0	0.0	.	.	.	Atlas-SNP
PBX2	5089	hgsc.bcm.edu	37	6	32155509	32155509	+	Missense_Mutation	SNP	T	T	A	rs202223627		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	PBX2,NS,carcinoma,0,4	PBX2	NM_002586	exon5	c.A785T	p.Y262F	TAGAAATACTCAT	.	120.0	7.0	121.0	2.0	0.001	0	4	Atlas-SNP
CD93	22918	hgsc.bcm.edu	37	20	23066500	23066500	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_012072	exon1	c.G330T	p.P110P	CTTCAGCGGCAGA	.	58.0	29.0	99.0	0.0	.	.	.	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	37	17	39594811	39594811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	KRT38,mouth,carcinoma,+1,1	KRT38	NM_006771	exon5	c.T952C	p.S318P	TCTCCGACTGGCA	.	124.0	34.0	138.0	0.0	.	+1	1	Atlas-SNP
LRRTM4	80059	hgsc.bcm.edu	37	2	77746912	77746912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	LRRTM4_ENST00000409911,NS,carcinoma,0,10	LRRTM4_ENST00000409911	NM_024993	exon3	c.C83G	p.T28R	GCACCCGTGAGCA	.	141.0	38.0	184.0	0.0	.	0	10	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	37	10	134713076	134713076	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001200049	exon23	c.C3019T	p.R1007X	CCAGTCGCAGCTG	.	64.0	12.0	135.0	0.0	.	.	.	Atlas-SNP
C17orf76-AS1	125144	hgsc.bcm.edu	37	17	16342606	16342606	+	RNA	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	GCTGCCGTGGCTG	.	133.0	21.0	153.0	0.0	.	.	.	Atlas-SNP
FGL2	10875	hgsc.bcm.edu	37	7	76825646	76825646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006682	exon2	c.T1270C	p.S424P	TGAAGGAGGACTT	.	115.0	32.0	108.0	0.0	.	.	.	Atlas-SNP
NUDT17	200035	hgsc.bcm.edu	37	1	145586679	145586679	+	Silent	SNP	C	C	A	rs150364859	bycluster;byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	NUDT17,NS,carcinoma,-1,1	NUDT17	NM_001012758	exon8	c.G897T	p.P299P	TTTACACGGTGGG	.	70.0	5.0	118.0	2.0	.	-1	1	Atlas-SNP
PAX1	5075	hgsc.bcm.edu	37	20	21689976	21689976	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006192	exon4	c.G1176T	p.P392P	CCCGCCGTGGCCG	.	14.0	7.0	16.0	0.0	.	.	.	Atlas-SNP
MAPK8IP3	23162	hgsc.bcm.edu	37	16	1818243	1818243	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	MAPK8IP3_ENST00000250894,colon,carcinoma,+2,2	MAPK8IP3_ENST00000250894	NM_015133	exon30	c.G3603A	p.G1201G	TCCCGGGGGCATC	.	53.0	6.0	43.0	0.0	.	+2	2	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	37	8	121215961	121215961	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_021110	exon9	c.G891T	p.A297A	AAACGCGGATGTG	.	68.0	4.0	70.0	0.0	.	.	.	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	37	1	178063808	178063808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_170692	exon1	c.C181T	p.Q61X	CAGCAACAGAGCT	.	219.0	52.0	212.0	0.0	.	.	.	Atlas-SNP
FANCB	2187	hgsc.bcm.edu	37	X	14868779	14868779	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_152633	exon6	c.T1344C	p.P448P	ACAAAGAGGAACA	.	233.0	79.0	140.0	0.0	.	.	.	Atlas-SNP
ACTA2	59	hgsc.bcm.edu	37	10	90697898	90697898	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001141945	exon8	c.G910C	p.G304R	TGGTGCCCCCTGA	.	145.0	51.0	232.0	0.0	.	.	.	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	37	9	139277986	139277986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_003086	exon15	c.C1635A	p.D545E	TGGCTCGTCCTCC	.	60.0	4.0	81.0	0.0	.	.	.	Atlas-SNP
FTSJD2	23070	hgsc.bcm.edu	37	6	37446211	37446211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_015050	exon22	c.C2180T	p.S727F	AGGGCTCCAGTGG	.	118.0	39.0	159.0	0.0	.	.	.	Atlas-SNP
