Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
NFIA	4774	hgsc.bcm.edu	37	1	61548476	61548477	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NFIA	NM_001145512	exon2	c.147_148del	p.49_50del	.	.	345.0	94.0	285.0	0.0	.	76	.	Atlas-Indel
UBE2F	140739	hgsc.bcm.edu	37	2	238881845	238881846	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	UBE2F	NM_080678	exon2	c.95_96del	p.32_32del	.	.	35.0	14.0	50.0	0.0	.	11	.	Atlas-Indel
NLGN1	22871	hgsc.bcm.edu	37	3	173525625	173525627	+	Splice_Site	DEL	AAG	AAG	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NLGN1	.	.	.	.	.	.	123.0	19.0	81.0	0.0	.	209	.	Atlas-Indel
SLC27A1	376497	hgsc.bcm.edu	37	19	17598309	17598309	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_198580	exon4	c.G765C	p.L255L	CGGGCTGCCCAAG	.	31.0	11.0	50.0	0.0	.	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	37	X	123184103	123184103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001042749	exon11	c.G961T	p.D321Y	TATAGTGATGCCT	.	57.0	18.0	38.0	0.0	.	.	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	37	3	124732413	124732413	+	Silent	SNP	A	A	G	rs369359384		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_020733	exon6	c.T2010C	p.S670S	TGAAGAAGAAGAA	.	70.0	5.0	67.0	0.0	.	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139824126	139824126	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_152888	exon9	c.C1365T	p.P455P	GGGTGGGGGTGGA	.	96.0	11.0	93.0	0.0	.	.	.	Atlas-SNP
KDM2A	22992	hgsc.bcm.edu	37	11	67018078	67018078	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_012308	exon17	c.A2577G	p.E859E	GGAGGAAGAGGAG	.	56.0	6.0	36.0	0.0	.	.	.	Atlas-SNP
GPD2	2820	hgsc.bcm.edu	37	2	157435487	157435487	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001083112	exon14	c.T1854C	p.I618I	TGAAATTAGCCTA	.	52.0	6.0	77.0	0.0	.	.	.	Atlas-SNP
RUNDC1	146923	hgsc.bcm.edu	37	17	41141537	41141537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_173079	exon3	c.G837A	p.M279I	TGAGATGTTTATC	.	108.0	30.0	75.0	0.0	.	.	.	Atlas-SNP
SCUBE2	57758	hgsc.bcm.edu	37	11	9096033	9096033	+	Missense_Mutation	SNP	G	G	A	rs72549241	byfrequency	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	SCUBE2_ENST00000457346,NS,malignant_melanoma,+1,5	SCUBE2_ENST00000457346	NM_001170690	exon4	c.C512T	p.S171L	CCTTCCGAGCGGT	.	76.0	4.0	68.0	0.0	0.005	+1	5	Atlas-SNP
ENG	2022	hgsc.bcm.edu	37	9	130578304	130578304	+	Silent	SNP	G	G	A	rs370943570		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001114753	exon14	c.C1770T	p.P590P	CACGGCGGGCAGG	.	70.0	27.0	95.0	0.0	.	.	.	Atlas-SNP
USP20	10868	hgsc.bcm.edu	37	9	132631164	132631164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001008563	exon12	c.C1159T	p.R387C	CACCTACGCAGCT	.	47.0	15.0	45.0	0.0	.	.	.	Atlas-SNP
GABRP	2568	hgsc.bcm.edu	37	5	170235654	170235654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_014211	exon8	c.T730C	p.Y244H	GTTCTGTATTTCA	.	123.0	44.0	136.0	0.0	.	.	.	Atlas-SNP
CD1E	913	hgsc.bcm.edu	37	1	158324199	158324199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	CD1E,NS,carcinoma,0,1	CD1E	NM_001185107	exon2	c.G91T	p.A31S	CTAGCAGCAGAGG	.	164.0	10.0	119.0	0.0	.	0	1	Atlas-SNP
P2RX5-TAX1BP3	0	hgsc.bcm.edu	37	17	3571757	3571757	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	GACGAGGAGGAGC	.	108.0	15.0	76.0	0.0	.	.	.	Atlas-SNP
ABCD1	215	hgsc.bcm.edu	37	X	153001577	153001577	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_000033	exon3	c.G1093C	p.V365L	GAGGCCGTGAAGA	.	150.0	16.0	67.0	0.0	.	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	90016770	90016770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_032119	exon45	c.C9642G	p.I3214M	AGACATCGAAGAA	.	78.0	38.0	119.0	0.0	.	.	.	Atlas-SNP
TMCO2	127391	hgsc.bcm.edu	37	1	40713810	40713810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	TMCO2,NS,carcinoma,0,1	TMCO2	NM_001008740	exon1	c.C145G	p.P49A	CTTGCTCCAGCTG	.	129.0	31.0	109.0	0.0	.	0	1	Atlas-SNP
SUN2	25777	hgsc.bcm.edu	37	22	39148563	39148563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001199580	exon3	c.G71A	p.G24E	GAGCTCCCTCCGC	.	37.0	16.0	40.0	0.0	.	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30954870	30954870	+	Silent	SNP	T	T	C	rs9262377	bycluster	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	MUC21,rectum,carcinoma,0,1	MUC21	NM_001010909	exon2	c.T918C	p.S306S	GTCCAGTACGACC	.	47.0	2.0	40.0	1.0	.	0	1	Atlas-SNP
RPLP1	6176	hgsc.bcm.edu	37	15	69747557	69747557	+	Missense_Mutation	SNP	G	G	T	rs200917641	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001003	exon3	c.G196T	p.G66C	GGGGCCGGTGGAC	.	97.0	31.0	141.0	0.0	.	.	.	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	37	9	33307242	33307242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_147134	exon5	c.G1321C	p.G441R	AGCTGTGGTGAGG	.	76.0	6.0	93.0	0.0	.	.	.	Atlas-SNP
GRIP1	23426	hgsc.bcm.edu	37	12	66765536	66765536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_021150	exon22	c.C2794A	p.L932M	TTCTCAGGGTTAC	.	74.0	17.0	71.0	0.0	.	.	.	Atlas-SNP
USP6NL	9712	hgsc.bcm.edu	37	10	11569522	11569522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080491	exon2	c.G100A	p.E34K	CTATTTCAGCTCG	.	44.0	11.0	57.0	0.0	.	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158622412	158622412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	SPTA1,NS,carcinoma,+1,3	SPTA1	NM_003126	exon23	c.C3220A	p.R1074S	GTCTGCGTTCTTC	.	110.0	5.0	100.0	0.0	.	+1	3	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	37	17	71387578	71387578	+	Splice_Site	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001144952	exon29	c.3997+1G>A	.	GGCTTACCAAGAA	.	130.0	18.0	98.0	0.0	.	.	.	Atlas-SNP
SLC38A8	146167	hgsc.bcm.edu	37	16	84075679	84075679	+	Silent	SNP	G	G	T	rs140582456	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080442	exon1	c.C84A	p.G28G	GACAGCGCCCATC	.	71.0	24.0	55.0	0.0	.	.	.	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	37	19	55698956	55698956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_002842	exon14	c.G2491A	p.G831S	TGTGGCCCACCAG	.	112.0	44.0	116.0	0.0	.	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113169776	113169776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_153366	exon38	c.G8104A	p.D2702N	TTCCATCTTCCTG	.	54.0	18.0	76.0	0.0	.	.	.	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	37	20	36841586	36841586	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001029864	exon14	c.T3461G	p.L1154R	GTGGCAAGCAAAT	.	37.0	17.0	32.0	0.0	.	.	.	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	37	8	30700548	30700548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_031271	exon1	c.G5986A	p.A1996T	ATTCAGCCTGATC	.	148.0	36.0	126.0	0.0	.	.	.	Atlas-SNP
CCR10	2826	hgsc.bcm.edu	37	17	40831978	40831978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_016602	exon2	c.G682C	p.A228P	GAAGCGCGTAGCA	.	23.0	6.0	14.0	0.0	.	.	.	Atlas-SNP
ZNF185	7739	hgsc.bcm.edu	37	X	152110348	152110348	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001178115	exon1	c.C96A	p.P32P	TGGGCCCGAGGAG	.	58.0	5.0	28.0	0.0	.	.	.	Atlas-SNP
SATL1	340562	hgsc.bcm.edu	37	X	84349179	84349179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001012980	exon4	c.A1831C	p.K611Q	GTACCTTGCCAGT	.	324.0	21.0	219.0	0.0	.	.	.	Atlas-SNP
SEMG1	6406	hgsc.bcm.edu	37	20	43836447	43836447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_003007	exon2	c.G509A	p.G170E	TTCATGGACTAAG	.	89.0	6.0	119.0	0.0	.	.	.	Atlas-SNP
ARHGEF6	9459	hgsc.bcm.edu	37	X	135763031	135763031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_004840	exon15	c.C1563G	p.N521K	CACTGTGTTACCT	.	113.0	16.0	75.0	0.0	.	.	.	Atlas-SNP
PIK3CD	5293	hgsc.bcm.edu	37	1	9780069	9780069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_005026	exon10	c.G1333A	p.V445I	CCCTCCGTCCCAG	.	116.0	11.0	137.0	0.0	.	.	.	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	37	1	86959124	86959124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	CLCA1,colon,carcinoma,-2,1	CLCA1	NM_001285	exon10	c.G1522A	p.V508M	GTGATCGTGGACA	.	138.0	9.0	148.0	0.0	.	-2	1	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	37	19	41072264	41072264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_020971	exon30	c.C6335T	p.T2112M	TGACCACGGTCAG	.	25.0	4.0	36.0	0.0	.	.	.	Atlas-SNP
ZNF502	91392	hgsc.bcm.edu	37	3	44762585	44762585	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001134440	exon4	c.A276G	p.E92E	CAAAGAAGCACCC	.	106.0	11.0	116.0	0.0	.	.	.	Atlas-SNP
SMAD7	4092	hgsc.bcm.edu	37	18	46474772	46474772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_005904	exon2	c.G649T	p.D217Y	GAAAATCCATCGG	.	128.0	11.0	148.0	0.0	.	.	.	Atlas-SNP
ZNF300	91975	hgsc.bcm.edu	37	5	150276491	150276491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001172831	exon7	c.A358T	p.T120S	AAACTGTCCCCAA	.	105.0	40.0	108.0	0.0	.	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112179374	112179374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001127510	exon17	c.A8083G	p.K2695E	AACATTAAAGATT	.	98.0	4.0	100.0	0.0	.	.	.	Atlas-SNP
