Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
TCERG1	10915	hgsc.bcm.edu	37	5	145838663	145838664	+	In_Frame_Ins	INS	-	-	CCCAGG	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	TCERG1	NM_006706	exon4	c.655_656insCCCAGG	p.A219delinsAQA	.	.	135.0	39.0	128.0	0.0	.	148	.	Atlas-Indel
GPATCH2L	55668	hgsc.bcm.edu	37	14	76644260	76644261	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_017972	exon7	c.1077_1078del	p.359_360del	.	.	144.0	24.0	108.0	0.0	.	.	.	Pindel,Atlas-Indel
BAZ1B	9031	hgsc.bcm.edu	37	7	72892059	72892060	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	BAZ1B	NM_032408	exon7	c.1732_1733del	p.578_578del	.	.	198.0	30.0	173.0	0.0	.	147	.	Atlas-Indel
MUC4	4585	hgsc.bcm.edu	37	3	195509484	195509484	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	MUC4_ENST00000463781,NS,carcinoma,-2,1	MUC4_ENST00000463781	NM_018406	exon2	c.C8967G	p.H2989Q	GGTGGCGTGACCT	.	52.0	3.0	48.0	1.0	.	-2	1	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	37	5	5462346	5462346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_015325	exon13	c.C2899T	p.Q967X	CTCATCCAAAACC	.	124.0	51.0	132.0	0.0	.	.	.	Atlas-SNP
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	rs76607193	bycluster;byfrequency	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC	.	119.0	5.0	122.0	0.0	0.003	0	1	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2_ENST00000405201	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	72.0	5.0	60.0	2.0	.	0	11	Atlas-SNP
MAPK10	5602	hgsc.bcm.edu	37	4	87022243	87022243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	MAPK10_ENST00000449047,NS,carcinoma,0,3	MAPK10_ENST00000449047	NM_002753	exon8	c.C692A	p.A231D	TCAGGGGCTCTGT	.	155.0	33.0	130.0	0.0	.	0	3	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	37	17	7727167	7727167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_020877	exon74	c.C11345A	p.A3782D	AAAATGCCTGCAA	.	84.0	14.0	70.0	0.0	.	.	.	Atlas-SNP
