Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ATXN1	6310	hgsc.bcm.edu	37	6	16327894	16327895	+	In_Frame_Ins	INS	-	-	TGA	rs71806515	alternate_allele	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	ATXN1	NM_000332	exon8	c.648_649insTCA	p.Q216delinsHQ	.	.	57.0	31.0	55.0	0.0	.	117	.	Atlas-Indel
SMARCA5	8467	hgsc.bcm.edu	37	4	144471183	144471186	+	Frame_Shift_Del	DEL	TTGA	TTGA	-	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	TTGA	TTGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	SMARCA5	NM_003601	exon23	c.3018_3021del	p.1006_1007del	.	.	89.0	31.0	100.0	0.0	.	73	.	Atlas-Indel
IL19	29949	hgsc.bcm.edu	37	1	207010078	207010078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_153758	exon2	c.G185T	p.G62V	ACCACGGTCTCAG	.	88.0	4.0	84.0	0.0	.	.	.	Atlas-SNP
LRRC41	10489	hgsc.bcm.edu	37	1	46768994	46768994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006369	exon1	c.A1T	p.M1L	CCGCCATCTTGGG	.	40.0	14.0	32.0	0.0	.	.	.	Atlas-SNP
BIVM-ERCC5	0	hgsc.bcm.edu	37	13	103520594	103520594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	ERCC5,NS,malignant_melanoma,0,1	ERCC5	NM_001204425	exon20	c.C4027G	p.L1343V	GAACCTCTCCTAA	.	157.0	74.0	226.0	2.0	.	0	1	Atlas-SNP
E4F1	1877	hgsc.bcm.edu	37	16	2284682	2284682	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004424	exon11	c.G1692A	p.R564R	GGTGCGGCACGTG	.	168.0	40.0	104.0	0.0	.	.	.	Atlas-SNP
LOXL4	84171	hgsc.bcm.edu	37	10	100017443	100017443	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_032211	exon8	c.C1224A	p.V408V	GCACCTGACAGCA	.	66.0	4.0	55.0	0.0	.	.	.	Atlas-SNP
TRPC3	7222	hgsc.bcm.edu	37	4	122831506	122831506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001130698	exon6	c.A1595G	p.E532G	GGTCCTTCCAGCC	.	57.0	19.0	61.0	0.0	.	.	.	Atlas-SNP
ATXN8OS	6315	hgsc.bcm.edu	37	13	70681838	70681838	+	RNA	SNP	C	C	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	GCTTTACGCACAG	.	30.0	9.0	23.0	0.0	.	.	.	Atlas-SNP
OR2L3	391192	hgsc.bcm.edu	37	1	248224864	248224864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	OR2L3,NS,carcinoma,+1,1	OR2L3	NM_001004687	exon1	c.A881G	p.K294R	GGAACAAGGAGGT	.	81.0	5.0	88.0	1.0	.	+1	1	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	37	16	2164211	2164211	+	Missense_Mutation	SNP	G	G	A	rs74488735		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	PKD1,NS,haematopoietic_neoplasm,0,4	PKD1	NM_000296	exon11	c.C2813T	p.T938M	CTGGGCGTGGCGC	.	51.0	6.0	28.0	0.0	.	0	4	Atlas-SNP
CLOCK	9575	hgsc.bcm.edu	37	4	56319847	56319847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004898	exon14	c.T1127C	p.V376A	TACCTTACTACAG	.	157.0	59.0	207.0	0.0	.	.	.	Atlas-SNP
C7orf26	79034	hgsc.bcm.edu	37	7	6631350	6631350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_024067	exon2	c.C266G	p.S89C	AGGACTCTGTTCG	.	251.0	74.0	177.0	0.0	.	.	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	37	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT	.	103.0	5.0	70.0	0.0	.	.	.	Atlas-SNP
EPAS1	2034	hgsc.bcm.edu	37	2	46603853	46603853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001430	exon9	c.G1210A	p.A404T	CAGCTGGCTCCCA	.	96.0	21.0	70.0	0.0	.	.	.	Atlas-SNP
CARD17	440068	hgsc.bcm.edu	37	11	104971361	104971361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	CARD17,bladder,carcinoma,0,1	CARD17	NM_001007232	exon2	c.G153A	p.M51I	CTTATCCATAACT	.	124.0	44.0	151.0	1.0	.	0	1	Atlas-SNP
GLRB	2743	hgsc.bcm.edu	37	4	158057651	158057651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_000824	exon5	c.A328G	p.K110E	AGACAAAAATGGA	.	151.0	63.0	175.0	0.0	.	.	.	Atlas-SNP
IFIT5	24138	hgsc.bcm.edu	37	10	91178125	91178125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_012420	exon2	c.G1169C	p.R390P	TTCACCGTAAATC	.	115.0	43.0	157.0	0.0	.	.	.	Atlas-SNP
TCP10	6953	hgsc.bcm.edu	37	6	167789494	167789494	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004610	exon6	c.C648A	p.A216A	CGTGGTGGCCTGG	.	111.0	41.0	85.0	0.0	.	.	.	Atlas-SNP
SON	6651	hgsc.bcm.edu	37	21	34927489	34927489	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	SON_ENST00000300278,NS,carcinoma,0,2	SON_ENST00000300278	NM_032195	exon3	c.G5952C	p.R1984R	CCGCCGGAGCCGC	.	22.0	5.0	11.0	1.0	.	0	2	Atlas-SNP
SLAMF8	56833	hgsc.bcm.edu	37	1	159799841	159799841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_020125	exon2	c.T226G	p.F76V	TCCCGCTTCCTGG	.	113.0	46.0	89.0	0.0	.	.	.	Atlas-SNP
PKN3	29941	hgsc.bcm.edu	37	9	131469216	131469216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_013355	exon5	c.G565T	p.V189F	CTGCACGTTGAGG	.	60.0	4.0	41.0	0.0	.	.	.	Atlas-SNP
FCHSD1	89848	hgsc.bcm.edu	37	5	141026222	141026222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_033449	exon11	c.G992T	p.R331L	GTCAAGCGCTGAA	.	41.0	10.0	31.0	0.0	.	.	.	Atlas-SNP
KLK5	25818	hgsc.bcm.edu	37	19	51453209	51453209	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_012427	exon3	c.G237T	p.P79P	CTGCCACGGCTGG	.	47.0	21.0	68.0	0.0	.	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	37	X	83128817	83128817	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_021118	exon4	c.A1101G	p.P367P	GTACCCAGAGTCT	.	136.0	64.0	80.0	0.0	.	.	.	Atlas-SNP
FCHSD1	89848	hgsc.bcm.edu	37	5	141026223	141026223	+	Missense_Mutation	SNP	G	G	T	rs372866853	alternate_allele	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_033449	exon11	c.C991A	p.R331S	TCAAGCGCTGAAC	.	40.0	10.0	32.0	0.0	.	.	.	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	37	12	130919365	130919365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_015347	exon11	c.G2116A	p.E706K	CCTCCTCGTCTGA	.	81.0	27.0	58.0	0.0	.	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49444817	49444817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_003482	exon10	c.C2649A	p.F883L	GGGAGGGAACAAG	.	170.0	43.0	135.0	0.0	.	.	.	Atlas-SNP
SPAG11B	10407	hgsc.bcm.edu	37	8	7308297	7308297	+	Missense_Mutation	SNP	C	C	G	rs370915382	alternate_allele	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	SPAG11B_ENST00000398462,NS,carcinoma,0,2	SPAG11B_ENST00000398462	NM_058201	exon3	c.G340C	p.V114L	TTGATACGCAACA	.	250.0	59.0	355.0	0.0	.	0	2	Atlas-SNP
PHF20L1	51105	hgsc.bcm.edu	37	8	133849987	133849987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_016018	exon17	c.G2122A	p.V708M	CACAGCGTGTGCA	.	49.0	15.0	67.0	0.0	.	.	.	Atlas-SNP
