Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
AACS	65985	hgsc.bcm.edu	37	12	125626747	125626747	+	Missense_Mutation	SNP	G	G	A	rs146784734	bycluster;by1000genomes	TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_023928	exon18	c.G1991A	p.R664Q	TGTACCGGGACAT	.	101.0	22.0	95.0	0.0	0.000	.	.	Atlas-SNP
USP48	84196	hgsc.bcm.edu	37	1	22028019	22028019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_032236	exon22	c.A2699G	p.D900G	TCTCCATCTGGTT	.	77.0	15.0	79.0	0.0	.	.	.	Atlas-SNP
ZNF396	252884	hgsc.bcm.edu	37	18	32949292	32949292	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	ZNF396,NS,carcinoma,+1,1	ZNF396	NM_145756	exon4	c.C895A	p.R299R	GGGTTCGTCGATG	.	70.0	3.0	126.0	0.0	.	+1	1	Atlas-SNP
CDC42EP1	11135	hgsc.bcm.edu	37	22	37964429	37964429	+	Missense_Mutation	SNP	T	T	C	rs62235034	bycluster;byfrequency;by1000genomes	TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_152243	exon3	c.T778C	p.S260P	AACCCCTCAGCAC	.	55.0	7.0	23.0	0.0	0.356	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	TBP,NS,carcinoma,0,2	TBP	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG	.	64.0	6.0	59.0	0.0	.	0	2	Atlas-SNP
LHX5	64211	hgsc.bcm.edu	37	12	113906210	113906210	+	Splice_Site	SNP	C	C	T	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_022363	exon4	c.398-1G>A	.	ATGACACTGCGGG	.	75.0	31.0	76.0	0.0	.	.	.	Atlas-SNP
TAAR2	9287	hgsc.bcm.edu	37	6	132938975	132938975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001033080	exon2	c.C370A	p.L124M	GCATCAGGTCAAA	.	55.0	5.0	39.0	0.0	.	.	.	Atlas-SNP
EIF3A	8661	hgsc.bcm.edu	37	10	120820788	120820788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_003750	exon8	c.A1175G	p.N392S	AGCCAATTGTAAA	.	100.0	31.0	150.0	0.0	.	.	.	Atlas-SNP
FUT8	2530	hgsc.bcm.edu	37	14	66209100	66209100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_178155	exon11	c.A1700G	p.Y567C	TCAAGTACCCCAC	.	72.0	21.0	78.0	0.0	.	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	37	11	103093789	103093789	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001377	exon59	c.G9327A	p.L3109L	TCCTTTGGAAACT	.	26.0	17.0	57.0	0.0	.	.	.	Atlas-SNP
NOD1	10392	hgsc.bcm.edu	37	7	30491538	30491538	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_006092	exon6	c.C1495A	p.R499R	AAGCCCGCAGGAA	.	85.0	4.0	69.0	0.0	.	.	.	Atlas-SNP
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578121	1578121	+	RNA	SNP	G	G	C	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	.	.	.	.	GTCCCAGTCTTTT	.	39.0	5.0	39.0	0.0	.	.	.	Atlas-SNP
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11117118	11117118	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	.	.	.	.	TAGGATGAATGAA	.	22.0	10.0	12.0	0.0	.	.	.	Atlas-SNP
IPO5	3843	hgsc.bcm.edu	37	13	98667828	98667828	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_002271	exon23	c.T2424C	p.F808F	ACACTTTGAAGAA	.	48.0	11.0	85.0	0.0	.	.	.	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152191287	152191287	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001009931	exon3	c.C2818G	p.Q940E	AGGACTGCCCTGA	.	59.0	21.0	67.0	0.0	.	.	.	Atlas-SNP
ATP5J	522	hgsc.bcm.edu	37	21	27102058	27102058	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001003701	exon2	c.C72T	p.A24A	TGAGACGGCTGAC	.	249.0	36.0	190.0	0.0	.	.	.	Atlas-SNP
HLA-H	3136	hgsc.bcm.edu	37	6	29856882	29856882	+	RNA	SNP	C	C	G	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	.	.	.	.	CAGCCTCCACTCA	.	53.0	5.0	45.0	0.0	.	.	.	Atlas-SNP
MAN2B2	23324	hgsc.bcm.edu	37	4	6599004	6599004	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_015274	exon8	c.C1222T	p.Q408X	CAGCTCCAGCAGC	.	79.0	21.0	84.0	0.0	.	.	.	Atlas-SNP
