Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
AHNAK2	113146	hgsc.bcm.edu	37	14	105409580	105409580	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_138420	exon7	c.12209delA	p.Q4070fs	.	.	166.0	11.0	124.0	0.0	.	.	.	Atlas-Indel
NPLOC4	55666	hgsc.bcm.edu	37	17	79589248	79589248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_017921	exon3	c.C153G	p.N51K	GGTCTTGTTTCTA	.	75.0	6.0	68.0	0.0	.	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	37	9	114134001	114134001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001080398	exon44	c.C5171T	p.A1724V	ATTGATGCCATGG	.	93.0	6.0	110.0	0.0	.	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	rs199969873	bycluster;by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA	.	68.0	10.0	44.0	1.0	0.005	0	5	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49420275	49420275	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_003482	exon48	c.G15474A	p.E5158E	GTCCCGCTCAATG	.	65.0	14.0	55.0	0.0	.	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789345	117789345	+	Missense_Mutation	SNP	G	G	C	rs61900347	bycluster;by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	TMPRSS13_ENST00000445164,NS,carcinoma,0,2	TMPRSS13_ENST00000445164	NM_001206790	exon2	c.C230G	p.A77G	GCCTGGGCTGGAG	.	56.0	9.0	47.0	0.0	0.101	0	2	Atlas-SNP
SOS1	6654	hgsc.bcm.edu	37	2	39237743	39237743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_005633	exon15	c.T2492C	p.L831P	AGAGTGAGGTTGG	.	67.0	4.0	57.0	0.0	.	.	.	Atlas-SNP
FAM149B1	317662	hgsc.bcm.edu	37	10	74937685	74937685	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	FAM149B1,NS,carcinoma,0,2	FAM149B1	NM_173348	exon3	c.C234A	p.G78G	TACAGGCGCAGGG	.	66.0	4.0	58.0	0.0	.	0	2	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC	.	48.0	2.0	40.0	0.0	.	0	2	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99126540	99126540	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_015179	exon27	c.G3174A	p.E1058E	CTCCTCCTCTTCT	.	57.0	6.0	45.0	0.0	.	.	.	Atlas-SNP
SHKBP1	92799	hgsc.bcm.edu	37	19	41094564	41094564	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_138392	exon14	c.T1371C	p.S457S	ATGGTCTGTGACT	.	125.0	17.0	79.0	0.0	.	.	.	Atlas-SNP
CATSPERG	57828	hgsc.bcm.edu	37	19	38858705	38858705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_021185	exon26	c.G2948T	p.W983L	TTATCTGGACCAC	.	81.0	4.0	64.0	0.0	.	.	.	Atlas-SNP
HLA-DMA	3108	hgsc.bcm.edu	37	6	32917166	32917166	+	Silent	SNP	G	G	A	rs371040586		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	HLA-DMA,NS,carcinoma,-1,2	HLA-DMA	NM_006120	exon4	c.C663T	p.N221N	CAGTGCGTTCCGG	.	66.0	11.0	65.0	0.0	.	-1	2	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	37	10	21805466	21805466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	C10orf140_ENST00000449193,caecum,carcinoma,0,4	C10orf140_ENST00000449193	NM_207371	exon4	c.G1286A	p.G429E	CTGCCCCCCTCCT	.	51.0	3.0	46.0	0.0	.	0	4	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789327	117789327	+	Missense_Mutation	SNP	T	T	C	rs61900346	bycluster;byfrequency;by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	TMPRSS13_ENST00000445164,NS,carcinoma,0,4	TMPRSS13_ENST00000445164	NM_001206790	exon2	c.A248G	p.Q83R	GATGCCTGGGCTG	.	65.0	8.0	39.0	0.0	0.186	0	4	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789342	117789342	+	Missense_Mutation	SNP	T	T	C	rs75037497	bycluster	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001206790	exon2	c.A233G	p.Q78R	GATGCCTGGGCTG	.	60.0	12.0	45.0	0.0	0.500	.	.	Atlas-SNP
FAM149A	25854	hgsc.bcm.edu	37	4	187084616	187084616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001006655	exon9	c.G872A	p.G291D	GGGCAGGTGCTCT	.	114.0	12.0	100.0	0.0	.	.	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	37	22	46658494	46658494	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	PKDREJ,colon,carcinoma,0,1	PKDREJ	NM_006071	exon1	c.C726T	p.N242N	CGAGGCGTTGATG	.	65.0	8.0	55.0	0.0	.	0	1	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30954728	30954728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	MUC21,bladder,carcinoma,-1,1	MUC21	NM_001010909	exon2	c.A776G	p.E259G	ACTCTGAGTCCAG	.	70.0	6.0	35.0	1.0	.	-1	1	Atlas-SNP
C14orf23	387978	hgsc.bcm.edu	37	14	29242602	29242602	+	RNA	SNP	A	A	G	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	AGGAAAAGGATAT	.	66.0	4.0	70.0	0.0	.	.	.	Atlas-SNP
