Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
IRS2	8660	hgsc.bcm.edu	37	13	110435932	110435932	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_003749	exon1	c.C2469A	p.Y823X	GAGCACGTACTGG	.	57.0	16.0	64.0	0.0	.	.	.	Atlas-SNP
OTUD4	54726	hgsc.bcm.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC	.	77.0	4.0	80.0	1.0	.	0	2	Atlas-SNP
LMO3	55885	hgsc.bcm.edu	37	12	16713458	16713458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_001243613	exon5	c.C287A	p.T96K	TTTCCCGTTACAC	.	247.0	14.0	83.0	0.0	.	.	.	Atlas-SNP
ZNF398	57541	hgsc.bcm.edu	37	7	148863275	148863275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_170686	exon3	c.C446G	p.S149C	ATGTCTCCATCTA	.	144.0	41.0	123.0	0.0	.	.	.	Atlas-SNP
GCKR	2646	hgsc.bcm.edu	37	2	27730108	27730108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	GCKR,rectum,carcinoma,0,1	GCKR	NM_001486	exon13	c.G1073A	p.R358Q	ATTTCCGAGATGT	.	66.0	18.0	49.0	0.0	.	0	1	Atlas-SNP
DDX59	83479	hgsc.bcm.edu	37	1	200618324	200618324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_001031725	exon6	c.G1345C	p.V449L	CAAATACTAACAC	.	169.0	48.0	156.0	0.0	.	.	.	Atlas-SNP
ARMC2	84071	hgsc.bcm.edu	37	6	109274550	109274550	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_032131	exon13	c.G1911A	p.T637T	GACCACGCTGGGT	.	17.0	7.0	11.0	0.0	.	.	.	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	37	10	71969413	71969413	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	PPA1,NS,carcinoma,-1,1	PPA1	NM_021129	exon7	c.T540C	p.P180P	GTAGCCAGGTTTC	.	127.0	7.0	108.0	2.0	.	-1	1	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45232075	45232075	+	Missense_Mutation	SNP	A	A	T	rs199711781	bycluster	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon8	c.T920A	p.V307E	TCAATTACAGGAG	.	63.0	5.0	48.0	1.0	0.001	0	2	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51612794	51612794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_170724	exon58	c.C9620T	p.A3207V	CTGGTGGCCACAA	.	180.0	52.0	110.0	0.0	.	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30955043	30955043	+	Missense_Mutation	SNP	G	G	A	rs9262385	bycluster;byfrequency	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	MUC21,NS,neuroblastoma,0,1	MUC21	NM_001010909	exon2	c.G1091A	p.G364E	ACTCTGGGTCCAG	.	22.0	2.0	20.0	2.0	0.008	0	1	Atlas-SNP
OTUD1	220213	hgsc.bcm.edu	37	10	23729299	23729299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_001145373	exon1	c.C913T	p.R305W	TATCTGCGGCAGA	.	43.0	10.0	59.0	0.0	.	.	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045915	7045915	+	Missense_Mutation	SNP	G	G	T	rs148885085	bycluster;byfrequency;alternate_allele	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	ATN1,colon,carcinoma,0,1	ATN1	NM_001007026	exon5	c.G1485T	p.Q495H	GCAGCAGCAGCAG	.	190.0	9.0	44.0	1.0	.	0	1	Atlas-SNP
ANAPC5	51433	hgsc.bcm.edu	37	12	121775139	121775139	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_016237	exon6	c.G714A	p.K238K	TAATTCCTTCTGC	.	53.0	30.0	62.0	0.0	.	.	.	Atlas-SNP
RAD54L2	23132	hgsc.bcm.edu	37	3	51694124	51694124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_015106	exon21	c.G3399A	p.M1133I	TCGGATGGCTGCC	.	156.0	36.0	108.0	0.0	.	.	.	Atlas-SNP
