Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KIAA0040	9674	hgsc.bcm.edu	37	1	175129933	175129934	+	Frame_Shift_Ins	INS	-	-	CATC	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	KIAA0040,colon,carcinoma,0,1	KIAA0040	NM_001162893	exon5	c.217_218insGATG	p.K73fs	.	.	110.0	12.0	92.0	0.0	.	2	.	Atlas-Indel
DPP3	10072	hgsc.bcm.edu	37	11	66276583	66276583	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DPP3	NM_130443	exon18	c.2074delT	p.S692fs	.	.	53.0	20.0	58.0	0.0	.	61	.	Atlas-Indel
DPP3	10072	hgsc.bcm.edu	37	11	66276583	66276584	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DPP3	NM_130443	exon18	c.2074_2075del	p.692_692del	.	.	54.0	16.0	59.0	0.0	.	61	.	Pindel
C2orf50	130813	hgsc.bcm.edu	37	2	11273603	11273603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_182500	exon1	c.C143A	p.A48D	GCCAGGCCCCCCA	.	37.0	14.0	38.0	0.0	.	.	.	Atlas-SNP
PTPMT1	114971	hgsc.bcm.edu	37	11	47587435	47587435	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001143984	exon1	c.G261T	p.L87L	TTTGCTGAGCCAC	.	129.0	59.0	139.0	0.0	.	.	.	Atlas-SNP
ARID4B	51742	hgsc.bcm.edu	37	1	235345258	235345258	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016374	exon20	c.C2976T	p.V992V	ACTATCGACATTG	.	106.0	6.0	111.0	0.0	.	.	.	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	37	6	15497278	15497278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_004973	exon7	c.G1822A	p.V608I	CGGTTTGTCACGC	.	139.0	23.0	127.0	0.0	.	.	.	Atlas-SNP
DCAF12	25853	hgsc.bcm.edu	37	9	34089434	34089434	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_015397	exon8	c.A1179C	p.K393N	GGTTAGTTTCAGA	.	68.0	17.0	69.0	0.0	.	.	.	Atlas-SNP
PHC2	1912	hgsc.bcm.edu	37	1	33832793	33832793	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_198040	exon6	c.G900A	p.V300V	CCCTGGCACACTG	.	82.0	23.0	126.0	0.0	.	.	.	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	37	16	1544544	1544544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016111	exon2	c.G262T	p.A88S	CTGTGGGCCAGCT	.	50.0	26.0	47.0	0.0	.	.	.	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	37	11	2436203	2436203	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_014555	exon10	c.G1554A	p.W518X	GTCCCGCCAGGGG	.	19.0	7.0	14.0	0.0	.	.	.	Atlas-SNP
TCOF1	6949	hgsc.bcm.edu	37	5	149754707	149754707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001135243	exon10	c.C1469T	p.A490V	CACTGGCAGCCAT	.	120.0	39.0	166.0	0.0	.	.	.	Atlas-SNP
ATP6	0	hgsc.bcm.edu	37	MT	9203	9203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	ENST00000361899	exon1	c.C677T	p.T226M	ACAACACATAATG	.	32.0	29.0	31.0	0.0	.	.	.	Atlas-SNP
ARHGAP36	158763	hgsc.bcm.edu	37	X	130215791	130215791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_144967	exon2	c.C152G	p.S51W	TGGTATCGATACA	.	98.0	41.0	66.0	0.0	.	.	.	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	37	16	16297454	16297454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001171	exon8	c.G811C	p.A271P	TAAATGCTATTGC	.	141.0	57.0	207.0	0.0	.	.	.	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	42.0	2.0	43.0	1.0	.	0	2	Atlas-SNP
