Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
GPR162	27239	hgsc.bcm.edu	37	12	6935869	6935869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	GPR162,caecum,carcinoma,0,1	GPR162	NM_019858	exon5	c.C1267T	p.P423S	TCTACCCCTCGGG	.	96.0	4.0	80.0	0.0	.	0	1	Atlas-SNP
LHFPL3	375612	hgsc.bcm.edu	37	7	103969251	103969251	+	Silent	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC	.	48.0	3.0	45.0	1.0	.	0	1	Atlas-SNP
FRMD4A	55691	hgsc.bcm.edu	37	10	13838519	13838519	+	Silent	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	FRMD4A,NS,malignant_melanoma,-1,1	FRMD4A	NM_018027	exon5	c.C276A	p.P92P	AACCACGGGTCCT	.	115.0	5.0	120.0	0.0	.	-1	1	Atlas-SNP
APOA1BP	128240	hgsc.bcm.edu	37	1	156563324	156563324	+	Missense_Mutation	SNP	T	T	C	rs200378020	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_144772	exon5	c.T641C	p.I214T	TGCCCATTGCCAG	.	107.0	11.0	110.0	0.0	.	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	37	12	112605270	112605270	+	Silent	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001109662	exon72	c.C11983T	p.L3995L	TCCCCAGCAGCTG	.	91.0	19.0	99.0	0.0	.	.	.	Atlas-SNP
MSRB3	253827	hgsc.bcm.edu	37	12	65672601	65672601	+	Missense_Mutation	SNP	G	G	C	rs377713148	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_198080	exon1	c.G53C	p.C18S	CCCTCTGCCTCTG	.	127.0	6.0	108.0	0.0	.	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	37	6	45390445	45390445	+	Silent	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	RUNX2_ENST00000352853,lower_third,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.A174G	p.Q58Q	GCAGCAACAGCAG	.	49.0	3.0	51.0	0.0	.	0	2	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599340	55599340	+	Missense_Mutation	SNP	T	T	G	rs121913514	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	KIT,NS,malignant_melanoma,+2,48	KIT	NM_000222	exon17	c.T2466G	p.N822K	TTCTAATTATGTG	.	89.0	36.0	68.0	0.0	.	+2	48	Atlas-SNP
HSF2	3298	hgsc.bcm.edu	37	6	122744744	122744744	+	Silent	SNP	T	T	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_004506	exon10	c.T1089C	p.Y363Y	GGATTATCTTGAC	.	60.0	12.0	58.0	0.0	.	.	.	Atlas-SNP
C10orf120	399814	hgsc.bcm.edu	37	10	124459132	124459132	+	Silent	SNP	G	G	T	rs76198528	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001010912	exon1	c.C175A	p.R59R	CTCACCGCAACGG	.	77.0	4.0	82.0	0.0	.	.	.	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	37	3	47455365	47455365	+	Silent	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_012235	exon23	c.T3819C	p.S1273S	CAGCACAGAGGGC	.	127.0	21.0	115.0	0.0	.	.	.	Atlas-SNP
ERCC1	2067	hgsc.bcm.edu	37	19	45920093	45920093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001983	exon6	c.G588T	p.L196F	GAGGATCAATGTG	.	71.0	7.0	71.0	0.0	.	.	.	Atlas-SNP
PTCD3	55037	hgsc.bcm.edu	37	2	86361968	86361968	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_017952	exon21	c.G1636C	p.V546L	CTTCAGGTGGCAT	.	201.0	38.0	210.0	0.0	.	.	.	Atlas-SNP
CHKA	1119	hgsc.bcm.edu	37	11	67842260	67842260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001277	exon4	c.C554T	p.A185V	AGAATGGCAAACA	.	67.0	5.0	100.0	0.0	.	.	.	Atlas-SNP
VPS45	11311	hgsc.bcm.edu	37	1	150053547	150053547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	VPS45,NS,carcinoma,-2,1	VPS45	NM_007259	exon8	c.T811G	p.F271V	GATGAATTCTATG	.	108.0	15.0	99.0	0.0	.	-2	1	Atlas-SNP
MRAP2	112609	hgsc.bcm.edu	37	6	84772667	84772667	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_138409	exon3	c.T183G	p.F61L	TATGTTTTTTGTG	.	146.0	22.0	121.0	0.0	.	.	.	Atlas-SNP
APOA2	336	hgsc.bcm.edu	37	1	161193189	161193189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001643	exon2	c.G3T	p.M1I	CAGCTTCATGTTG	.	94.0	13.0	66.0	0.0	.	.	.	Atlas-SNP
LRRC37BP1	147172	hgsc.bcm.edu	37	17	28961033	28961033	+	RNA	SNP	T	T	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	.	.	.	.	CCAGGATATGACT	.	113.0	5.0	106.0	0.0	.	.	.	Atlas-SNP
SCAF8	22828	hgsc.bcm.edu	37	6	155154403	155154403	+	Silent	SNP	A	A	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_014892	exon20	c.A3690T	p.V1230V	ACCAGTACAGAAT	.	106.0	18.0	107.0	0.0	.	.	.	Atlas-SNP
TPGS2	25941	hgsc.bcm.edu	37	18	34378389	34378389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001271954	exon6	c.T680G	p.L227W	GTTTACAATGGCA	.	80.0	27.0	79.0	0.0	.	.	.	Atlas-SNP
PLEKHH1	57475	hgsc.bcm.edu	37	14	68044798	68044798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020715	exon19	c.C2633T	p.S878F	ATGTGTCCCTGGC	.	150.0	32.0	116.0	0.0	.	.	.	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	37	2	187559029	187559029	+	Silent	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_177454	exon1	c.A129G	p.Q43Q	CATCCAACAGCAG	.	49.0	4.0	58.0	0.0	.	.	.	Atlas-SNP
