Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
OR52D1	390066	hgsc.bcm.edu	37	11	5510157	5510158	+	In_Frame_Ins	INS	-	-	GGC	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	OR52D1	NM_001005163	exon1	c.221_222insGGC	p.L74delinsLA	.	.	156.0	14.0	198.0	0.0	.	66	.	Atlas-Indel
NF1	4763	hgsc.bcm.edu	37	17	29486050	29486051	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.,1	NF1	NM_001042492	exon3	c.226_227del	p.76_76del	.	.	59.0	10.0	47.0	0.0	.	1586	.	Atlas-Indel
DSPP	1834	hgsc.bcm.edu	37	4	88537205	88537213	+	In_Frame_Del	DEL	GACAGCAGT	GACAGCAGT	-	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	GACAGCAGT	GACAGCAGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	DSPP	NM_014208	exon5	c.3390_3398del	p.1130_1133del	.	.	48.0	44.0	48.0	0.0	.	174	.	Atlas-Indel
KNTC1	9735	hgsc.bcm.edu	37	12	123107038	123107038	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	KNTC1,NS,carcinoma,0,1	KNTC1	NM_014708	exon62	c.C6399G	p.I2133M	TATCATCAATAAG	.	146.0	14.0	138.0	0.0	.	0	1	Atlas-SNP
tRNA-Pro	0	hgsc.bcm.edu	37	MT	15986	15986	+	RNA	SNP	G	G	A	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	.	.	.	.	CCATTAGCACCCA	.	11.0	9.0	40.0	0.0	.	.	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	37	7	113518539	113518539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_002711	exon4	c.C2608T	p.P870S	CTGTTGGTAACAT	.	110.0	10.0	86.0	0.0	.	.	.	Atlas-SNP
TRIM28	10155	hgsc.bcm.edu	37	19	59060468	59060468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	TRIM28,NS,carcinoma,+1,1	TRIM28	NM_005762	exon12	c.T1523A	p.V508D	TCAAGGTCTTCCC	.	244.0	48.0	307.0	0.0	.	+1	1	Atlas-SNP
UBD	10537	hgsc.bcm.edu	37	6	29523770	29523770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_006398	exon2	c.A385G	p.T129A	TCTGGGTCTCAGG	.	301.0	44.0	257.0	0.0	.	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	37	9	2039776	2039776	+	Silent	SNP	A	A	G	rs13296987	byfrequency	TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	SMARCA2_ENST00000349721,NS,carcinoma,0,2	SMARCA2_ENST00000349721	NM_139045	exon4	c.A666G	p.Q222Q	GCAGCAACAGCAG	.	68.0	10.0	77.0	0.0	0.250	0	2	Atlas-SNP
TBC1D3P5	440419	hgsc.bcm.edu	37	17	25756182	25756182	+	RNA	SNP	G	G	A	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	.	.	.	.	TCCAGGGGTGCCA	.	36.0	6.0	31.0	0.0	.	.	.	Atlas-SNP
SLC2A1	6513	hgsc.bcm.edu	37	1	43395380	43395380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_006516	exon6	c.A751G	p.M251V	GCATCATCTGCCG	.	40.0	9.0	57.0	0.0	.	.	.	Atlas-SNP
STX16-NPEPL1	100534593	hgsc.bcm.edu	37	20	57266755	57266755	+	RNA	SNP	T	T	C	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	.	.	.	.	CTTTTTTTTTTTT	.	21.0	4.0	14.0	0.0	.	.	.	Atlas-SNP
MRPL40	64976	hgsc.bcm.edu	37	22	19422334	19422334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_003776	exon3	c.G213C	p.K71N	AAGGAAGATCCGA	.	115.0	12.0	133.0	0.0	.	.	.	Atlas-SNP
FAM83G	644815	hgsc.bcm.edu	37	17	18882003	18882003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001039999	exon5	c.A976G	p.I326V	GCACAATAGGCTC	.	58.0	8.0	118.0	0.0	.	.	.	Atlas-SNP
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776	bycluster	TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001012710	exon1	c.C69T	p.G23G	TGGGGGCTGTGGC	.	88.0	14.0	103.0	0.0	0.500	.	.	Atlas-SNP
RNR1	6052	hgsc.bcm.edu	37	MT	1016	1016	+	RNA	SNP	T	T	C	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	.	.	.	.	ACAAAATAGACTA	.	25.0	15.0	88.0	0.0	.	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152702176	152702176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_033071	exon56	c.G8995A	p.D2999N	CCTCATCCGTGTT	.	150.0	17.0	121.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	rs121913506	bycluster	TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA	.	45.0	11.0	82.0	0.0	.	0	932	Atlas-SNP
MTA2	9219	hgsc.bcm.edu	37	11	62367713	62367713	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_004739	exon3	c.G115C	p.E39Q	TTGCCTCCACATT	.	109.0	33.0	108.0	0.0	.	.	.	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	37	19	38673203	38673203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_015073	exon16	c.C4253A	p.T1418N	ACAAAACTGCCAG	.	123.0	6.0	146.0	0.0	.	.	.	Atlas-SNP
