Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.,2	KRTAP9-1	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	.	.	64.0	10.0	67.0	0.0	.	34	.	Pindel
FRG1B	284802	hgsc.bcm.edu	37	20	29625854	29625854	+	RNA	SNP	C	C	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	TTTTATCTATCTT	.	118.0	5.0	126.0	0.0	.	.	.	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	37	1	12921136	12921136	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	PRAMEF2,pharynx,carcinoma,0,1	PRAMEF2	NM_023014	exon4	c.C927T	p.D309D	AGAGGACTTGAAG	.	81.0	6.0	103.0	1.0	.	0	1	Atlas-SNP
PABPC3	5042	hgsc.bcm.edu	37	13	25671967	25671967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_030979	exon1	c.G1631T	p.R544M	CCTCCAGGTTGGC	.	82.0	4.0	78.0	0.0	.	.	.	Atlas-SNP
ADPGK	83440	hgsc.bcm.edu	37	15	73044820	73044820	+	Silent	SNP	T	T	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_031284	exon7	c.A1353G	p.V451V	TTCTACTACTGGC	.	164.0	17.0	156.0	0.0	.	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	37	8	110509211	110509211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	PKHD1L1,NS,carcinoma,+1,1	PKHD1L1	NM_177531	exon64	c.A10391G	p.Y3464C	GGATCTATATGAA	.	163.0	8.0	138.0	0.0	.	+1	1	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	37	12	1291122	1291122	+	Missense_Mutation	SNP	G	G	C	rs200296939	by1000genomes;alternate_allele	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_178040	exon10	c.G1907C	p.R636T	AGCAGAGGGACAG	.	184.0	13.0	166.0	0.0	.	.	.	Atlas-SNP
ALDOB	229	hgsc.bcm.edu	37	9	104187142	104187142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_000035	exon8	c.T982G	p.F328V	TCATAAAAGCCTC	.	188.0	32.0	192.0	0.0	.	.	.	Atlas-SNP
SNX29P1	100652781	hgsc.bcm.edu	37	16	21396860	21396860	+	RNA	SNP	T	T	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	TTTTTCTTTTTTT	.	137.0	8.0	128.0	0.0	.	.	.	Atlas-SNP
FRG1B	284802	hgsc.bcm.edu	37	20	29625856	29625856	+	RNA	SNP	A	A	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	TTATCTATCTTAT	.	120.0	5.0	126.0	0.0	.	.	.	Atlas-SNP
DDIT4	54541	hgsc.bcm.edu	37	10	74034751	74034751	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_019058	exon3	c.C504T	p.S168S	CCCCAGCCTGGTG	.	66.0	7.0	72.0	0.0	.	.	.	Atlas-SNP
CABS1	85438	hgsc.bcm.edu	37	4	71201486	71201486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_033122	exon1	c.C730G	p.L244V	ATTGACCTAAGTG	.	69.0	15.0	86.0	0.0	.	.	.	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	37	15	52671830	52671830	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_000259	exon18	c.C2200T	p.L734L	GTATCAGTTTCTC	.	138.0	9.0	106.0	0.0	.	.	.	Atlas-SNP
DNASE2B	58511	hgsc.bcm.edu	37	1	84880280	84880280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_021233	exon6	c.G815C	p.R272T	GAAAAAGACAAGA	.	159.0	19.0	160.0	0.0	.	.	.	Atlas-SNP
