Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SLC25A13	10165	hgsc.bcm.edu	37	7	95822404	95822406	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	ATG	ATG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	SLC25A13	NM_001160210	exon6	c.559_561del	p.187_187del	.	.	168.0	16.0	128.0	0.0	.	131	.	Atlas-Indel
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643024	1643025	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	KRTAP5-4	NM_001012709	exon1	c.300_301insG	p.G100fs	.	.	322.0	23.0	308.0	0.0	.	78	.	Atlas-Indel
EPO	2056	hgsc.bcm.edu	37	7	100320334	100320334	+	Silent	SNP	G	G	A	rs374875798		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_000799	exon4	c.G294A	p.S98S	GCTGTCGGAAGCT	.	128.0	11.0	104.0	0.0	.	.	.	Atlas-SNP
TEPP	374739	hgsc.bcm.edu	37	16	58011892	58011892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_199046	exon2	c.A337C	p.K113Q	ACCGTCAAGGCCT	.	72.0	5.0	95.0	0.0	.	.	.	Atlas-SNP
ZNF343	79175	hgsc.bcm.edu	37	20	2464083	2464083	+	Silent	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_024325	exon6	c.C1524T	p.L508L	TCTGATGAGATTT	.	127.0	21.0	101.0	0.0	.	.	.	Atlas-SNP
PEBP4	157310	hgsc.bcm.edu	37	8	22582428	22582428	+	Missense_Mutation	SNP	G	G	A	rs201433464	bycluster;alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	PEBP4,colon,carcinoma,+1,3	PEBP4	NM_144962	exon6	c.C445T	p.R149C	GGTAGCGATGGAA	.	273.0	32.0	199.0	0.0	.	+1	3	Atlas-SNP
MAG	4099	hgsc.bcm.edu	37	19	35790581	35790581	+	Silent	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_080600	exon5	c.G540T	p.L180L	GGGGCTGGGGGAG	.	46.0	7.0	43.0	0.0	.	.	.	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	59.0	5.0	43.0	0.0	.	0	2	Atlas-SNP
POLD1	5424	hgsc.bcm.edu	37	19	50918215	50918215	+	Silent	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_002691	exon20	c.C2532T	p.V844V	CCTGGTCACTGCC	.	44.0	6.0	42.0	0.0	.	.	.	Atlas-SNP
C16orf70	80262	hgsc.bcm.edu	37	16	67165195	67165195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_025187	exon4	c.G238C	p.E80Q	GTGATCGAAGTAT	.	182.0	20.0	215.0	0.0	.	.	.	Atlas-SNP
ST3GAL2	6483	hgsc.bcm.edu	37	16	70415679	70415679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_006927	exon7	c.G966C	p.K322N	GCCAGTCTTCCGG	.	141.0	23.0	126.0	0.0	.	.	.	Atlas-SNP
FAM8A1	51439	hgsc.bcm.edu	37	6	17602826	17602826	+	Nonsense_Mutation	SNP	G	G	T	rs74444948	bycluster;byfrequency	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	FAM8A1,NS,carcinoma,-1,2	FAM8A1	NM_016255	exon2	c.G718T	p.E240X	GGCAGAGAATATG	.	42.0	6.0	36.0	0.0	0.008	-1	2	Atlas-SNP
GK2	2712	hgsc.bcm.edu	37	4	80328968	80328968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_033214	exon1	c.A387T	p.K129N	TGGAATTTTTTTA	.	97.0	15.0	140.0	0.0	.	.	.	Atlas-SNP
SNX29P2	440352	hgsc.bcm.edu	37	16	29375984	29375984	+	RNA	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	TTTTTTTCTTTTT	.	115.0	5.0	128.0	0.0	.	.	.	Atlas-SNP
CDYL2	124359	hgsc.bcm.edu	37	16	80718479	80718479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_152342	exon2	c.G572A	p.G191D	CATTCACCCATAT	.	115.0	7.0	121.0	0.0	.	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	37	15	62199517	62199517	+	Silent	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	VPS13C,NS,carcinoma,-1,1	VPS13C	NM_020821	exon66	c.C9051A	p.T3017T	TTTTCTGGTACCA	.	119.0	6.0	122.0	0.0	.	-1	1	Atlas-SNP
FLJ31813	0	hgsc.bcm.edu	37	10	51823051	51823051	+	RNA	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	CCCCCCTACTCCC	.	67.0	21.0	74.0	0.0	.	.	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	125.0	13.0	84.0	0.0	0.500	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	37	X	66766356	66766356	+	Silent	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_000044	exon1	c.T1368C	p.G456G	GGGTGGTGGCGGC	.	21.0	4.0	9.0	0.0	.	.	.	Atlas-SNP
VN1R10P	387316	hgsc.bcm.edu	37	6	27293144	27293144	+	RNA	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	AAACAAGACTGTT	.	168.0	31.0	179.0	0.0	.	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	G	rs121913527	alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	KRAS_ENST00000256078,colon,carcinoma,+1,137	KRAS_ENST00000256078	NM_004985	exon4	c.G436C	p.A146P	TCTTTGCTGATGT	.	118.0	9.0	54.0	1.0	.	+1	137	Atlas-SNP
LCN1	3933	hgsc.bcm.edu	37	9	138415793	138415793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001252617	exon4	c.G360T	p.E120D	CTGTGAGGGCGAG	.	29.0	10.0	51.0	0.0	.	.	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	37	4	125590598	125590598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_020337	exon4	c.G3834C	p.K1278N	TCCAGACTTGGCA	.	95.0	20.0	110.0	0.0	.	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	37	5	128984530	128984530	+	Silent	SNP	A	A	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_133638	exon13	c.A2025G	p.K675K	CAGAAAACAATAC	.	147.0	20.0	213.0	0.0	.	.	.	Atlas-SNP
WDR52	55779	hgsc.bcm.edu	37	3	113115371	113115371	+	Silent	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001164496	exon14	c.C1773T	p.A591A	CCCTGTGGCTAGA	.	77.0	28.0	55.0	0.0	.	.	.	Atlas-SNP
