Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
MRPL3	11222	hgsc.bcm.edu	37	3	131220418	131220419	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	MRPL3	NM_007208	exon2	c.234_235del	p.78_79del	.	.	184.0	28.0	213.0	0.0	.	32	.	Pindel,Atlas-Indel
GPR179	440435	hgsc.bcm.edu	37	17	36485919	36485921	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	GPR179	NM_001004334	exon11	c.3532_3534del	p.1178_1178del	.	.	86.0	12.0	123.0	0.0	.	170	.	Atlas-Indel
CLDN14	23562	hgsc.bcm.edu	37	21	37833709	37833709	+	Silent	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	CLDN14,NS,carcinoma,0,1	CLDN14	NM_144492	exon3	c.C285T	p.C95C	GCAGGCGCAGGCT	.	63.0	5.0	49.0	1.0	.	0	1	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	rs121913240	bycluster	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG	.	185.0	55.0	107.0	0.0	.	+1	429	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	37	2	9661415	9661415	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_003183	exon8	c.A874C	p.K292Q	CAGGTTTTACCTC	.	141.0	41.0	121.0	0.0	.	.	.	Atlas-SNP
PHF3	23469	hgsc.bcm.edu	37	6	64423074	64423074	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_015153	exon15	c.C5590T	p.Q1864X	CCAGGTCAGCCAC	.	71.0	14.0	83.0	0.0	.	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412335	105412335	+	Silent	SNP	C	C	T	rs202104959	byfrequency	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	AHNAK2_ENST00000333244,NS,carcinoma,0,2	AHNAK2_ENST00000333244	NM_138420	exon7	c.G9453A	p.P3151P	GAACGACGGCATC	.	91.0	4.0	92.0	0.0	0.037	0	2	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	37	4	190884267	190884267	+	Missense_Mutation	SNP	G	G	A	rs373037319		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	FRG1,middle_lobe,carcinoma,0,1	FRG1	NM_004477	exon9	c.G760A	p.D254N	AAAGCCGACAGAT	.	25.0	4.0	46.0	1.0	.	0	1	Atlas-SNP
GOLGA3	2802	hgsc.bcm.edu	37	12	133353241	133353241	+	Silent	SNP	T	T	C	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	GOLGA3,right_upper_lobe,carcinoma,0,2	GOLGA3	NM_005895	exon21	c.A3957G	p.E1319E	TAGCCCTTCCAGT	.	63.0	3.0	50.0	2.0	.	0	2	Atlas-SNP
ZNF296	162979	hgsc.bcm.edu	37	19	45575017	45575017	+	Missense_Mutation	SNP	C	C	G	rs368413069	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_145288	exon3	c.G1270C	p.A424P	TCTGGGCGCAGGC	.	47.0	11.0	49.0	0.0	.	.	.	Atlas-SNP
CAD	790	hgsc.bcm.edu	37	2	27455982	27455982	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_004341	exon19	c.C2965G	p.L989V	GATCGACTCTACT	.	98.0	27.0	97.0	0.0	.	.	.	Atlas-SNP
SCAF1	58506	hgsc.bcm.edu	37	19	50149824	50149824	+	Silent	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_021228	exon5	c.G303A	p.V101V	GCTGGTGAGTGTC	.	55.0	13.0	63.0	0.0	.	.	.	Atlas-SNP
HERC6	55008	hgsc.bcm.edu	37	4	89304513	89304513	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	HERC6_ENST00000264346,NS,carcinoma,0,2	HERC6_ENST00000264346	NM_017912	exon2	c.G340T	p.E114X	TTCAAGGAAATAA	.	80.0	4.0	109.0	0.0	.	0	2	Atlas-SNP
IL2RB	3560	hgsc.bcm.edu	37	22	37540125	37540125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_000878	exon2	c.G88A	p.G30S	CCTCACCATTCAC	.	131.0	45.0	108.0	0.0	.	.	.	Atlas-SNP
