Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
LRRN2	10446	hgsc.bcm.edu	37	1	204587180	204587181	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	LRRN2	NM_006338	exon3	c.1941_1942insT	p.A647fs	.	.	59.0	10.0	66.0	0.0	.	81	.	Atlas-Indel
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305775	+	In_Frame_Ins	INS	-	-	TGGCAGCAGCTGGGG	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	KRTAP4-5,NS,carcinoma,0,1	KRTAP4-5	NM_033188	exon1	c.246_247insCCCCAGCTGCTGCCA	p.Q82delinsHPSCCQ	.	.	23.0	15.0	24.0	0.0	.	34	.	Atlas-Indel
KIAA0040	9674	hgsc.bcm.edu	37	1	175129946	175129947	+	In_Frame_Ins	INS	-	-	TTT	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	KIAA0040	NM_001162893	exon5	c.204_205insAAA	p.K68delinsKK	.	.	82.0	12.0	69.0	0.0	.	2	.	Atlas-Indel
CXCL6	6372	hgsc.bcm.edu	37	4	74702735	74702735	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	CXCL6,NS,carcinoma,0,1	CXCL6	NM_002993	exon2	c.C164G	p.T55R	GCGTTACGCTGAG	.	66.0	33.0	94.0	0.0	.	0	1	Atlas-SNP
GOLGA6L1	283767	hgsc.bcm.edu	37	15	22742718	22742718	+	Missense_Mutation	SNP	T	T	A	rs77248890		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	GOLGA6L1,NS,carcinoma,0,3	GOLGA6L1	NM_001001413	exon8	c.T1103A	p.L368Q	GGAGGCTGGAGGA	.	88.0	5.0	79.0	0.0	0.125	0	3	Atlas-SNP
DYNC2LI1	51626	hgsc.bcm.edu	37	2	44021861	44021861	+	Silent	SNP	A	A	C	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_015522	exon6	c.A586C	p.R196R	TTCTTTAGATTTT	.	170.0	7.0	130.0	0.0	.	.	.	Atlas-SNP
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11182835	11182835	+	RNA	SNP	T	T	C	rs28409955	bycluster	TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	.	.	.	.	CACACATATATAT	.	147.0	26.0	24.0	0.0	1.000	.	.	Atlas-SNP
FAM111B	374393	hgsc.bcm.edu	37	11	58892877	58892877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_198947	exon4	c.A1307G	p.K436R	ATAAAAAGGACTT	.	71.0	5.0	84.0	0.0	.	.	.	Atlas-SNP
PPT2-EGFL8	0	hgsc.bcm.edu	37	6	32123363	32123363	+	RNA	SNP	G	G	C	rs111653317	bycluster	TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	.	.	.	.	GTCTCTGTGTGTG	.	25.0	4.0	18.0	0.0	0.500	.	.	Atlas-SNP
MLX	6945	hgsc.bcm.edu	37	17	40720884	40720884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_170607	exon4	c.G361T	p.A121S	CAGGAGGCCTACA	.	80.0	18.0	112.0	0.0	.	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537501	88537501	+	Silent	SNP	T	T	C	rs112404065		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_014208	exon5	c.T3687C	p.S1229S	CAGCAGTGACAGC	.	94.0	8.0	108.0	0.0	1.000	.	.	Atlas-SNP
EIF4G3	8672	hgsc.bcm.edu	37	1	21205927	21205927	+	Silent	SNP	A	A	G	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001198801	exon18	c.T2451C	p.T817T	GTCAACAGTAAGT	.	106.0	33.0	110.0	0.0	.	.	.	Atlas-SNP
CCDC8	83987	hgsc.bcm.edu	37	19	46914867	46914867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	CCDC8,NS,carcinoma,+2,1	CCDC8	NM_032040	exon1	c.T1201C	p.S401P	CCTCTGACCCCTG	.	66.0	3.0	56.0	0.0	.	+2	1	Atlas-SNP
