Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
HIVEP1	3096	hgsc.bcm.edu	37	6	12121882	12121883	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	HIVEP1,NS,carcinoma,0,1	HIVEP1	NM_002114	exon4	c.1853_1854del	p.618_618del	.	.	90.0	26.0	79.0	0.0	.	242	.	Atlas-Indel
HLA-H	3136	hgsc.bcm.edu	37	6	29857993	29857993	+	RNA	SNP	T	T	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	ACCTTATGGCCCT	.	54.0	6.0	54.0	0.0	.	.	.	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	37	4	54257228	54257228	+	Silent	SNP	A	A	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_030917	exon8	c.A558G	p.K186K	CTGGAAAGCTTAC	.	365.0	85.0	186.0	0.0	.	.	.	Atlas-SNP
SIRT5	23408	hgsc.bcm.edu	37	6	13588626	13588626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_012241	exon4	c.G179T	p.G60V	GAGCTGGTGTTAG	.	152.0	43.0	146.0	0.0	.	.	.	Atlas-SNP
BRS3	680	hgsc.bcm.edu	37	X	135572573	135572573	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001727	exon2	c.T716G	p.L239W	ATTCCTTGATTGC	.	64.0	21.0	55.0	0.0	.	.	.	Atlas-SNP
CBX3	11335	hgsc.bcm.edu	37	7	26248012	26248012	+	Splice_Site	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_007276	exon4	c.168-1G>A	.	AACACAGTGCTGA	.	216.0	11.0	134.0	0.0	.	.	.	Atlas-SNP
TLR7	51284	hgsc.bcm.edu	37	X	12904184	12904184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_016562	exon3	c.G557T	p.R186L	ATTATCGAAATCC	.	92.0	40.0	82.0	0.0	.	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	37	2	234394246	234394246	+	Silent	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	USP40_ENST00000450966,NS,carcinoma,0,2	USP40_ENST00000450966	NM_018218	exon29	c.G3468A	p.K1156K	TTTTTTCTTTTTC	.	183.0	9.0	161.0	1.0	.	0	2	Atlas-SNP
SLC17A4	10050	hgsc.bcm.edu	37	6	25777039	25777039	+	Splice_Site	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	SLC17A4,NS,carcinoma,-1,1	SLC17A4	NM_005495	exon10	c.1121-1G>A	.	ACCCCAGGGGTTC	.	104.0	31.0	116.0	0.0	.	-1	1	Atlas-SNP
TCF3	6929	hgsc.bcm.edu	37	19	1612333	1612333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001136139	exon17	c.T1686G	p.I562M	CTCGTTAATATCC	.	145.0	39.0	157.0	0.0	.	.	.	Atlas-SNP
DDX54	79039	hgsc.bcm.edu	37	12	113617043	113617043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	DDX54,NS,carcinoma,0,1	DDX54	NM_024072	exon4	c.C469T	p.R157W	TGAGCCGCTCGAA	.	66.0	19.0	68.0	0.0	.	0	1	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885638	29885638	+	Missense_Mutation	SNP	T	T	A	rs190692435	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	NEFH,NS,lymphoid_neoplasm,0,1	NEFH	NM_021076	exon4	c.T2009A	p.V670E	CCCCAGTGAAGGC	.	229.0	12.0	169.0	0.0	.	0	1	Atlas-SNP
ABCC2	1244	hgsc.bcm.edu	37	10	101563999	101563999	+	Missense_Mutation	SNP	C	C	T	rs201399138		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	ABCC2,NS,carcinoma,0,2	ABCC2	NM_000392	exon10	c.C1433T	p.A478V	TTAATGCGATACT	.	80.0	4.0	102.0	0.0	0.001	0	2	Atlas-SNP
PER3	8863	hgsc.bcm.edu	37	1	7870564	7870564	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_016831	exon12	c.G1435C	p.E479Q	TACATTGAGTCAA	.	122.0	39.0	111.0	0.0	.	.	.	Atlas-SNP
ZNF606	80095	hgsc.bcm.edu	37	19	58490600	58490600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_025027	exon7	c.C1448G	p.P483R	ACATAAGGTTTTT	.	71.0	11.0	79.0	0.0	.	.	.	Atlas-SNP
C10orf2	56652	hgsc.bcm.edu	37	10	102753124	102753124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_021830	exon5	c.C1912G	p.L638V	GCCCGGCTCAAGA	.	134.0	46.0	111.0	0.0	.	.	.	Atlas-SNP
PEX19	5824	hgsc.bcm.edu	37	1	160254906	160254906	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002857	exon1	c.C9A	p.A3A	CTCAGCGGCGGCC	.	53.0	14.0	69.0	0.0	.	.	.	Atlas-SNP
SLC12A8	84561	hgsc.bcm.edu	37	3	124909295	124909295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_024628	exon3	c.C122G	p.T41S	TCCCAGGTCCCAA	.	223.0	54.0	255.0	0.0	.	.	.	Atlas-SNP
AKR1C4	1109	hgsc.bcm.edu	37	10	5242213	5242213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001818	exon2	c.G154T	p.A52S	GATTCTGCTTATT	.	105.0	5.0	105.0	0.0	.	.	.	Atlas-SNP
GNL3L	54552	hgsc.bcm.edu	37	X	54584946	54584946	+	Silent	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001184819	exon15	c.C1524T	p.R508R	CCACCGCCCTAAG	.	111.0	36.0	80.0	0.0	.	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	37	15	42003218	42003218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001080541	exon8	c.T2755G	p.L919V	TCCATTTTACCAT	.	117.0	28.0	86.0	0.0	.	.	.	Atlas-SNP
