Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
UBXN11	91544	hgsc.bcm.edu	37	1	26608855	26608855	+	Missense_Mutation	SNP	C	C	T	rs201756933		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_183008	exon16	c.G1498A	p.G500S	TGGGGCCGGGACC	.	23.0	4.0	13.0	0.0	.	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195507001	195507001	+	Missense_Mutation	SNP	A	A	G	rs199746940		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.T11450C	p.V3817A	GTGGATACTGAGG	.	56.0	4.0	47.0	0.0	.	0	1	Atlas-SNP
JAK2	3717	hgsc.bcm.edu	37	9	5080316	5080316	+	Missense_Mutation	SNP	G	G	T	rs368219482	alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_004972	exon17	c.G2219T	p.G740V	GTTTTGGTACCAC	.	151.0	32.0	145.0	0.0	.	.	.	Atlas-SNP
LCE1F	353137	hgsc.bcm.edu	37	1	152749008	152749008	+	Missense_Mutation	SNP	C	C	G	rs200931119	bycluster;byfrequency	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	LCE1F,colon,carcinoma,0,2	LCE1F	NM_178354	exon1	c.C161G	p.S54C	GTGGCTCCAGCTC	.	216.0	17.0	165.0	1.0	0.004	0	2	Atlas-SNP
CDK14	5218	hgsc.bcm.edu	37	7	90585027	90585027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_012395	exon8	c.A788T	p.K263I	GAGCAAAATCCGT	.	99.0	11.0	59.0	0.0	.	.	.	Atlas-SNP
SLC22A24	283238	hgsc.bcm.edu	37	11	62848443	62848443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	SLC22A24_ENST00000417740,NS,carcinoma,-2,1	SLC22A24_ENST00000417740	NM_001136506	exon9	c.C1547A	p.P516Q	GTTTCTGGAAGGA	.	78.0	4.0	90.0	0.0	.	-2	1	Atlas-SNP
GAD1	2571	hgsc.bcm.edu	37	2	171687483	171687483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_000817	exon5	c.G328A	p.E110K	AACGGTGAGGAGC	.	121.0	12.0	87.0	0.0	.	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536475	88536475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_014208	exon5	c.A2661C	p.E887D	CAACGAAAGCAGC	.	75.0	9.0	61.0	0.0	.	.	.	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	37	15	100211846	100211846	+	Missense_Mutation	SNP	G	G	A	rs75705863	bycluster	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	MEF2A_ENST00000354410,NS,carcinoma,+1,1	MEF2A_ENST00000354410	NM_005587	exon5	c.G380A	p.R127Q	TGATGCGGAATCA	.	40.0	4.0	20.0	0.0	.	+1	1	Atlas-SNP
TM4SF19-TCTEX1D2	0	hgsc.bcm.edu	37	3	196043134	196043134	+	RNA	SNP	G	G	C	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	CAGTCGGTGACTC	.	59.0	18.0	44.0	0.0	.	.	.	Atlas-SNP
STK11IP	114790	hgsc.bcm.edu	37	2	220467428	220467428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_052902	exon7	c.G581A	p.R194H	CTCAGCGCCTCTT	.	195.0	15.0	118.0	0.0	.	.	.	Atlas-SNP
FASTKD1	79675	hgsc.bcm.edu	37	2	170403079	170403079	+	Silent	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_024622	exon8	c.C1350T	p.N450N	ACTCAGGTTATTT	.	348.0	44.0	266.0	0.0	.	.	.	Atlas-SNP
RAB34	83871	hgsc.bcm.edu	37	17	27041699	27041699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	RAB34,NS,carcinoma,0,1	RAB34	NM_001144943	exon11	c.C913A	p.L305I	CAGTTAGGTAGAG	.	74.0	3.0	80.0	0.0	.	0	1	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38385792	38385792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_031951	exon4	c.T434C	p.L145P	ATTTGGAGGCCCG	.	114.0	10.0	104.0	0.0	.	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	37	14	24878059	24878059	+	Silent	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_025081	exon4	c.G1059A	p.G353G	CCCGGGGCCAGCC	.	130.0	23.0	104.0	0.0	.	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	26.0	4.0	18.0	1.0	.	0	2	Atlas-SNP
SEL1L	6400	hgsc.bcm.edu	37	14	81969081	81969081	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001244984	exon6	c.C761G	p.S254C	TTGGGAGAGCCTT	.	102.0	12.0	48.0	0.0	.	.	.	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	37	4	147560512	147560512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	POU4F2,NS,carcinoma,0,1	POU4F2	NM_004575	exon1	c.A220T	p.S74C	AGCTCCAGCAGCA	.	75.0	8.0	70.0	0.0	.	0	1	Atlas-SNP
DNAJC12	56521	hgsc.bcm.edu	37	10	69571358	69571358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_021800	exon3	c.G221A	p.R74H	TCATAGCGGGCTC	.	173.0	19.0	140.0	0.0	.	.	.	Atlas-SNP
GPATCH4	54865	hgsc.bcm.edu	37	1	156568272	156568272	+	Silent	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_015590	exon3	c.C109A	p.R37R	CCTTCCGGCCGAG	.	92.0	4.0	83.0	0.0	.	.	.	Atlas-SNP
FOXA1	3169	hgsc.bcm.edu	37	14	38060906	38060906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_004496	exon2	c.C1083A	p.S361R	CCCGGAGCTTATG	.	53.0	10.0	24.0	0.0	.	.	.	Atlas-SNP
C5	727	hgsc.bcm.edu	37	9	123751989	123751989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001735	exon24	c.C3011A	p.P1004H	CCTTTGGGGAGGT	.	79.0	4.0	53.0	0.0	.	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	37	6	69723993	69723993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001704	exon12	c.C1993A	p.Q665K	GATGCACAACAGG	.	369.0	81.0	273.0	0.0	.	.	.	Atlas-SNP
COG1	9382	hgsc.bcm.edu	37	17	71193472	71193472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_018714	exon4	c.C850T	p.P284S	CCAGATCCAGCCC	.	66.0	22.0	55.0	0.0	.	.	.	Atlas-SNP
RUFY3	22902	hgsc.bcm.edu	37	4	71659590	71659590	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001037442	exon13	c.C1426T	p.Q476X	AGTCTGCAGCTGG	.	227.0	23.0	153.0	0.0	.	.	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824949	20824949	+	Missense_Mutation	SNP	C	C	A	rs185796187	by1000genomes	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_182700	exon2	c.G487T	p.G163C	CGCCGCCGCCGCC	.	57.0	4.0	49.0	0.0	0.012	.	.	Atlas-SNP
