Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ROCK2	9475	hgsc.bcm.edu	37	2	11355177	11355178	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ROCK2	NM_004850	exon16	c.1725_1726del	p.575_576del	.	.	143.0	31.0	133.0	0.0	.	224	.	Atlas-Indel
AMH	268	hgsc.bcm.edu	37	19	2249483	2249484	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	AMH	NM_000479	exon1	c.151_152del	p.51_51del	.	.	38.0	10.0	24.0	0.0	.	12	.	Atlas-Indel
PAPSS2	9060	hgsc.bcm.edu	37	10	89473067	89473069	+	Frame_Shift_Del	DEL	GGT	GGT	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	PAPSS2	NM_001015880	exon3	c.380_381del	p.127_127del	.	.	112.0	11.0	90.0	0.0	.	46	.	Atlas-Indel
KIAA0040	9674	hgsc.bcm.edu	37	1	175129933	175129934	+	Frame_Shift_Ins	INS	-	-	CATC	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	KIAA0040,colon,carcinoma,0,1	KIAA0040	NM_001162893	exon5	c.217_218insGATG	p.K73fs	.	.	124.0	14.0	82.0	0.0	.	2	.	Atlas-Indel
ZFC3H1	196441	hgsc.bcm.edu	37	12	72023401	72023405	+	Frame_Shift_Del	DEL	TTTCA	TTTCA	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	TTTCA	TTTCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ZFC3H1	NM_144982	exon19	c.3811_3815del	p.1271_1272del	.	.	72.0	10.0	48.0	0.0	.	172	.	Atlas-Indel
ZNF789	285989	hgsc.bcm.edu	37	7	99084226	99084227	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ZNF789	NM_213603	exon5	c.392_393del	p.131_131del	.	.	187.0	27.0	191.0	0.0	.	33	.	Atlas-Indel
MYH9	4627	hgsc.bcm.edu	37	22	36716924	36716924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	MYH9,NS,malignant_melanoma,0,1	MYH9	NM_002473	exon8	c.C787T	p.R263C	TAGCACGAGATTT	.	76.0	12.0	65.0	0.0	.	0	1	Atlas-SNP
REEP6	92840	hgsc.bcm.edu	37	19	1496326	1496326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_138393	exon4	c.G391T	p.G131W	TGGAACGGGGCTC	.	54.0	6.0	49.0	0.0	.	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	37	9	139907669	139907669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_212533	exon30	c.G4742A	p.G1581D	AGCGAGCCGTTGG	.	34.0	6.0	40.0	0.0	.	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	37	3	121448824	121448824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_004487	exon3	c.C137T	p.T46I	TCTTGTGTAGTAT	.	100.0	22.0	61.0	0.0	.	.	.	Atlas-SNP
SLC29A3	55315	hgsc.bcm.edu	37	10	73121735	73121735	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_018344	exon6	c.G798T	p.A266A	TCTTGCGGCCCAT	.	120.0	5.0	77.0	0.0	.	.	.	Atlas-SNP
CCNK	8812	hgsc.bcm.edu	37	14	99959052	99959052	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001099402	exon2	c.C38G	p.T13S	CAGTAACTTCAGC	.	139.0	23.0	143.0	0.0	.	.	.	Atlas-SNP
GXYLT1	283464	hgsc.bcm.edu	37	12	42481617	42481617	+	Missense_Mutation	SNP	G	G	C	rs75740340	bycluster	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	Q8IXV1_HUMAN,NS,carcinoma,+1,2	Q8IXV1_HUMAN	NM_173601	exon8	c.C1294G	p.R432G	CATAACGATCTCT	.	73.0	3.0	83.0	0.0	0.002	+1	2	Atlas-SNP
GMEB2	26205	hgsc.bcm.edu	37	20	62221817	62221817	+	Silent	SNP	C	C	T	rs368204390		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_012384	exon10	c.G1218A	p.P406P	GGTGGACGGCAGG	.	108.0	23.0	84.0	0.0	.	.	.	Atlas-SNP
MYBPC3	4607	hgsc.bcm.edu	37	11	47360105	47360105	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_000256	exon22	c.C2274A	p.G758G	GTCCTCGCCCACA	.	99.0	4.0	129.0	0.0	.	.	.	Atlas-SNP
POLN	353497	hgsc.bcm.edu	37	4	2077181	2077181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_181808	exon22	c.C2453A	p.A818E	CTACCTGCACACT	.	80.0	4.0	80.0	0.0	.	.	.	Atlas-SNP
DPY19L2P2	349152	hgsc.bcm.edu	37	7	102825785	102825785	+	RNA	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	GTGTGTGTGTGTG	.	82.0	10.0	46.0	0.0	.	.	.	Atlas-SNP
CYP4B1	1580	hgsc.bcm.edu	37	1	47276567	47276567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_000779	exon2	c.G268T	p.G90C	TTCATTGGCTTCC	.	61.0	4.0	60.0	0.0	.	.	.	Atlas-SNP
CD276	80381	hgsc.bcm.edu	37	15	73995180	73995180	+	Silent	SNP	C	C	T	rs146911233	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001024736	exon4	c.C486T	p.T162T	GGTGACCATCACG	.	125.0	23.0	118.0	0.0	.	.	.	Atlas-SNP
GTDC2	84892	hgsc.bcm.edu	37	3	43121453	43121453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_032806	exon2	c.C1471A	p.Q491K	ACGCCTGGCACCG	.	84.0	4.0	68.0	0.0	.	.	.	Atlas-SNP
KRT33B	3884	hgsc.bcm.edu	37	17	39525812	39525812	+	Missense_Mutation	SNP	T	T	C	rs199518913	bycluster;by1000genomes	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	KRT33B,NS,carcinoma,+1,3	KRT33B	NM_002279	exon1	c.A191G	p.N64S	CGGTCGTTCAGGA	.	166.0	44.0	161.0	0.0	0.000	+1	3	Atlas-SNP
ZNF777	27153	hgsc.bcm.edu	37	7	149153033	149153033	+	Silent	SNP	G	G	A	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_015694	exon2	c.C81T	p.L27L	TCGGGGGAGTCCA	.	112.0	23.0	98.0	0.0	.	.	.	Atlas-SNP
