Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
NELFE	7936	hgsc.bcm.edu	37	6	31922436	31922437	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_002904	exon7	c.638_639del	p.213_213del	.	.	131.0	23.0	130.0	0.0	.	.	.	Atlas-Indel
SH2D6	284948	hgsc.bcm.edu	37	2	85662140	85662149	+	Frame_Shift_Del	DEL	CCCCACCCCA	CCCCACCCCA	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	CCCCACCCCA	CCCCACCCCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	SH2D6	NM_198482	exon1	c.61_70del	p.21_24del	.	.	273.0	40.0	351.0	0.0	.	15	.	Atlas-Indel
SACS	26278	hgsc.bcm.edu	37	13	23907326	23907329	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	SACS	NM_014363	exon10	c.10687_10690del	p.3563_3564del	.	.	157.0	46.0	253.0	0.0	.	871	.	Pindel
CDH15	1013	hgsc.bcm.edu	37	16	89245881	89245881	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	CDH15	NM_004933	exon2	c.99delC	p.P33fs	.	.	128.0	27.0	132.0	0.0	.	54	.	Pindel
DMD	1756	hgsc.bcm.edu	37	X	32364097	32364102	+	In_Frame_Del	DEL	TTTATC	TTTATC	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	TTTATC	TTTATC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	DMD	NM_004006	exon39	c.5545_5550del	p.1849_1850del	.	.	68.0	41.0	36.0	0.0	.	2127	.	Pindel
MIA2	117153	hgsc.bcm.edu	37	14	39703406	39703406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	MIA2	NM_054024	exon1	c.87delT	p.L29fs	.	.	59.0	27.0	90.0	0.0	.	82	.	Pindel
CLEC4C	170482	hgsc.bcm.edu	37	12	7883436	7883436	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	CLEC4C	NM_130441	exon6	c.455delA	p.H152fs	.	.	293.0	99.0	165.0	0.0	.	44	.	Pindel
FAM186A	121006	hgsc.bcm.edu	37	12	50725545	50725545	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	FAM186A	NM_001145475	exon6	c.6757delC	p.Q2253fs	.	.	114.0	51.0	113.0	0.0	.	181	.	Pindel
MYO18A	399687	hgsc.bcm.edu	37	17	27441062	27441063	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	MYO18A	NM_078471	exon15	c.2565_2566del	p.855_856del	.	.	52.0	14.0	76.0	0.0	.	217	.	Pindel
ZWILCH	55055	hgsc.bcm.edu	37	15	66812975	66812979	+	Frame_Shift_Del	DEL	AAGAA	AAGAA	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	AAGAA	AAGAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	ZWILCH	NM_017975	exon6	c.567_571del	p.189_191del	.	.	314.0	52.0	375.0	0.0	.	46	.	Pindel
MYH10	4628	hgsc.bcm.edu	37	17	8404192	8404193	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	MYH10	NM_001256012	exon29	c.3696_3697del	p.1232_1233del	.	.	78.0	23.0	68.0	0.0	.	148	.	Pindel
OR4L1	122742	hgsc.bcm.edu	37	14	20528601	20528601	+	Frame_Shift_Del	DEL	G	G	-	rs148115082	bycluster;by1000genomes	TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	OR4L1	NM_001004717	exon1	c.397delA	p.R133fs	.	.	71.0	22.0	108.0	0.0	0.990	98	.	Pindel
MED1	5469	hgsc.bcm.edu	37	17	37566459	37566461	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	MED1	NM_004774	exon17	c.2014_2016del	p.672_672del	.	.	86.0	34.0	125.0	0.0	.	123	.	Pindel
G6PC	2538	hgsc.bcm.edu	37	17	41059575	41059576	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	G6PC	NM_000151	exon3	c.376_377insTA	p.V126fs	.	.	109.0	48.0	125.0	0.0	.	48	.	Pindel
COX5B	1329	hgsc.bcm.edu	37	2	98264520	98264520	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001862	exon4	c.C339T	p.C113C	GCGATGCCCCCGC	.	277.0	72.0	330.0	0.0	.	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	37	1	186151356	186151356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_031935	exon105	c.G16351A	p.G5451R	ACCTTTGGAAGTT	.	234.0	64.0	229.0	0.0	.	.	.	Atlas-SNP
SLC30A1	7779	hgsc.bcm.edu	37	1	211751852	211751852	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_021194	exon1	c.C103T	p.L35L	TCGCCAGCGACGA	.	53.0	17.0	57.0	0.0	.	.	.	Atlas-SNP
RBM4B	83759	hgsc.bcm.edu	37	11	66436560	66436560	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_031492	exon3	c.C615T	p.Y205Y	TTCCCCGTAGCCC	.	78.0	34.0	164.0	0.0	.	.	.	Atlas-SNP
ADAM19	8728	hgsc.bcm.edu	37	5	156915307	156915307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_033274	exon21	c.C2516A	p.P839Q	GGAATTGGCCGGC	.	88.0	4.0	138.0	0.0	.	.	.	Atlas-SNP
KISS1	3814	hgsc.bcm.edu	37	1	204159651	204159651	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_002256	exon3	c.G378A	p.A126A	TGGTGCCGCCTCC	.	62.0	4.0	74.0	0.0	.	.	.	Atlas-SNP
PCOLCE	5118	hgsc.bcm.edu	37	7	100203305	100203305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_002593	exon5	c.G595A	p.A199T	GTCATCGCGCTGA	.	204.0	58.0	237.0	0.0	.	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	37	3	164777693	164777693	+	Silent	SNP	T	T	C	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001041	exon10	c.A1143G	p.P381P	TACAAATGGTATG	.	93.0	31.0	82.0	0.0	.	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	37	12	101763603	101763603	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	UTP20,NS,carcinoma,0,1	UTP20	NM_014503	exon49	c.G6489A	p.L2163L	TCTGCTGAAGGAC	.	95.0	6.0	91.0	0.0	.	0	1	Atlas-SNP
ZBTB11	27107	hgsc.bcm.edu	37	3	101371663	101371663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_014415	exon9	c.A2429C	p.Y810S	TGGGAATACCAAT	.	69.0	21.0	91.0	0.0	.	.	.	Atlas-SNP
ATXN7	6314	hgsc.bcm.edu	37	3	63898394	63898394	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_000333	exon3	c.G120T	p.P40P	GCAGCCGCCGCCT	.	7.0	4.0	9.0	0.0	.	.	.	Atlas-SNP
EPB41	2035	hgsc.bcm.edu	37	1	29359661	29359661	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001166006	exon9	c.C1269T	p.Y423Y	GGTTTACAAAGAT	.	97.0	36.0	137.0	0.0	.	.	.	Atlas-SNP
EDEM3	80267	hgsc.bcm.edu	37	1	184706178	184706178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_025191	exon4	c.A326G	p.D109G	AAAGAATCAATCA	.	305.0	95.0	355.0	0.0	.	.	.	Atlas-SNP
FERD3L	222894	hgsc.bcm.edu	37	7	19184670	19184670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	FERD3L,NS,carcinoma,0,1	FERD3L	NM_152898	exon1	c.G316A	p.A106T	TGTTGGCGGCCTG	.	104.0	37.0	108.0	0.0	.	0	1	Atlas-SNP
ABHD15	116236	hgsc.bcm.edu	37	17	27893554	27893554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_198147	exon1	c.G431A	p.C144Y	CGAACACAAGGTC	.	72.0	21.0	53.0	0.0	.	.	.	Atlas-SNP
ZNF732	654254	hgsc.bcm.edu	37	4	265103	265103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	ZNF732_ENST00000419098,NS,carcinoma,0,1	ZNF732_ENST00000419098	NM_001137608	exon3	c.A1540G	p.T514A	GGTATGTGGACCA	.	100.0	4.0	115.0	1.0	.	0	1	Atlas-SNP
ARHGAP4	393	hgsc.bcm.edu	37	X	153174596	153174596	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001164741	exon22	c.C2655A	p.A885A	TCCCATGGCCTCA	.	61.0	5.0	40.0	0.0	.	.	.	Atlas-SNP
MCM6	4175	hgsc.bcm.edu	37	2	136633830	136633830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_005915	exon1	c.G106A	p.E36K	CTTACTCCTCCAA	.	35.0	12.0	47.0	0.0	.	.	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	37	7	36447349	36447349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	ANLN,caecum,carcinoma,0,2	ANLN	NM_018685	exon5	c.A880T	p.T294S	AAAGCTACTTCTC	.	83.0	8.0	90.0	0.0	.	0	2	Atlas-SNP
