Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
THAP11	57215	hgsc.bcm.edu	37	16	67876823	67876824	+	In_Frame_Ins	INS	-	-	CAG	rs34213159	alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	THAP11,rectum,carcinoma,0,1	THAP11	NM_020457	exon1	c.366_367insCAG	p.Q122delinsQQ	.	.	60.0	13.0	41.0	0.0	.	27	.	Atlas-Indel
C20orf27	54976	hgsc.bcm.edu	37	20	3739195	3739195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001039140	exon3	c.C225G	p.S75R	CAGAAAGCTGCTG	.	61.0	15.0	35.0	0.0	.	.	.	Atlas-SNP
ARSG	22901	hgsc.bcm.edu	37	17	66339927	66339927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001267727	exon3	c.T401G	p.I134R	CTGGGATAATAGG	.	89.0	18.0	57.0	0.0	.	.	.	Atlas-SNP
FAM117B	150864	hgsc.bcm.edu	37	2	203591019	203591019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_173511	exon4	c.G893A	p.R298Q	GCAGTCGGCATCA	.	232.0	96.0	242.0	0.0	.	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	37	17	65955758	65955758	+	Silent	SNP	T	T	C	rs202116659	bycluster	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	BPTF_ENST00000335221,rectum,carcinoma,0,2	BPTF_ENST00000335221	NM_182641	exon24	c.T8028C	p.A2676A	ACCAGCTCCTCCA	.	205.0	20.0	140.0	1.0	.	0	2	Atlas-SNP
NR1I3	9970	hgsc.bcm.edu	37	1	161200952	161200952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001077478	exon7	c.G778A	p.E260K	CAGGCTCTTGGAG	.	146.0	36.0	107.0	0.0	.	.	.	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	37	16	31371099	31371099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_000887	exon6	c.T509A	p.M170K	CCACGATGATGAA	.	65.0	18.0	67.0	0.0	.	.	.	Atlas-SNP
TMCC3	57458	hgsc.bcm.edu	37	12	94976045	94976045	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020698	exon2	c.G348A	p.E116E	CTTCTTCTCAAAG	.	114.0	21.0	67.0	0.0	.	.	.	Atlas-SNP
SERINC5	256987	hgsc.bcm.edu	37	5	79465352	79465352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001174071	exon6	c.G569A	p.S190N	TTGTTACTGGCTG	.	68.0	24.0	83.0	0.0	.	.	.	Atlas-SNP
RBM17	84991	hgsc.bcm.edu	37	10	6157491	6157491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	RBM17,NS,carcinoma,0,1	RBM17	NM_001145547	exon12	c.G1178A	p.R393K	AATTCAGGGTCTT	.	50.0	10.0	45.0	0.0	.	0	1	Atlas-SNP
TMEM51-AS1	200197	hgsc.bcm.edu	37	1	15439098	15439098	+	RNA	SNP	C	C	T	rs114844404	bycluster	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	TTTTCTCCTCCCG	.	93.0	24.0	81.0	0.0	.	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	37	2	27804669	27804669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_032266	exon1	c.A5230T	p.S1744C	CATCACAGTCCCT	.	98.0	31.0	73.0	0.0	.	.	.	Atlas-SNP
ILVBL	10994	hgsc.bcm.edu	37	19	15233609	15233609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_006844	exon6	c.T611G	p.V204G	ACAAACACCGGAC	.	87.0	26.0	86.0	0.0	.	.	.	Atlas-SNP
ACSL6	23305	hgsc.bcm.edu	37	5	131310650	131310650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001009185	exon11	c.C1004T	p.P335L	TGTCTCGGAAAGA	.	192.0	60.0	230.0	0.0	.	.	.	Atlas-SNP
SBF1P1	100133234	hgsc.bcm.edu	37	8	56362215	56362215	+	RNA	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	TGGTGGCCATGCC	.	97.0	14.0	48.0	0.0	.	.	.	Atlas-SNP
ARHGAP17	55114	hgsc.bcm.edu	37	16	24965936	24965936	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001006634	exon10	c.C840T	p.G280G	CTTCATGCCTGTC	.	32.0	12.0	38.0	0.0	.	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	37	19	11144829	11144829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_003072	exon28	c.G3904T	p.V1302F	GAGACCGTCAACC	.	84.0	4.0	79.0	0.0	.	.	.	Atlas-SNP
LPA	4018	hgsc.bcm.edu	37	6	160978593	160978593	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005577	exon30	c.G4642T	p.E1548X	AGTTCTCGGTCAG	.	89.0	4.0	73.0	0.0	.	.	.	Atlas-SNP
ADAM9	8754	hgsc.bcm.edu	37	8	38871495	38871495	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_003816	exon4	c.C266G	p.P89R	TTTTGCCTGAAGA	.	90.0	15.0	60.0	0.0	.	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1261503	1261503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	MUC5B,NS,carcinoma,0,2	MUC5B	NM_002458	exon30	c.G3868A	p.G1290R	ATCTGCGGAAGCA	.	66.0	18.0	59.0	0.0	.	0	2	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	37	5	140604522	140604522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_018934	exon1	c.C1445A	p.T482N	CAGGCACCAACGC	.	54.0	11.0	29.0	0.0	.	.	.	Atlas-SNP
CSRNP3	80034	hgsc.bcm.edu	37	2	166514444	166514444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	CSRNP3,NS,carcinoma,0,1	CSRNP3	NM_001172173	exon5	c.G322A	p.E108K	CTTGGCGAGTTTG	.	168.0	65.0	154.0	0.0	.	0	1	Atlas-SNP
ZBTB1	22890	hgsc.bcm.edu	37	14	64989758	64989758	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_014950	exon2	c.G1536A	p.R512R	TTTTAGGGACAAT	.	68.0	25.0	67.0	0.0	.	.	.	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	37	16	67911669	67911669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_014329	exon7	c.T815C	p.L272P	ACATGCTCCGCTC	.	163.0	33.0	110.0	0.0	.	.	.	Atlas-SNP
