Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346593	39346595	+	In_Frame_Del	DEL	CCT	CCT	-	rs377187211	bycluster	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	KRTAP9-1_ENST00000398470,colon,carcinoma,0,2	KRTAP9-1	NM_001190460	exon1	c.454_456del	p.152_152del	.	.	78.0	21.0	65.0	0.0	.	34	.	Atlas-Indel
MLLT3	4300	hgsc.bcm.edu	37	9	20414311	20414313	+	In_Frame_Del	DEL	CTG	CTG	-	rs373338988		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MLLT3,caecum,carcinoma,0,1	MLLT3	NM_004529	exon5	c.532_534del	p.178_178del	.	.	89.0	18.0	75.0	0.0	.	125	.	Atlas-Indel
C17orf104	284071	hgsc.bcm.edu	37	17	42744013	42744016	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	CTAA	CTAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	C17orf104	NM_001145080	exon5	c.733_736del	p.245_246del	.	.	156.0	31.0	67.0	0.0	.	75	.	Pindel,Atlas-Indel
CTNND1	1500	hgsc.bcm.edu	37	11	57573388	57573392	+	Frame_Shift_Del	DEL	TATCA	TATCA	-	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	TATCA	TATCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	CTNND1	NM_001085461	exon10	c.1756_1760del	p.586_587del	.	.	86.0	17.0	101.0	0.0	.	203	.	Pindel,Atlas-Indel
CXXC1	30827	hgsc.bcm.edu	37	18	47812290	47812290	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	CXXC1,NS,carcinoma,0,1	CXXC1	NM_001101654	exon5	c.G468C	p.Q156H	CTGCTGCTGGTGA	.	75.0	3.0	122.0	1.0	.	0	1	Atlas-SNP
MARS	4141	hgsc.bcm.edu	37	12	57898052	57898052	+	Silent	SNP	G	G	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MARS,colon,carcinoma,+1,3	MARS	NM_004990	exon11	c.G1338C	p.S446S	GCAGTCGAGCCAG	.	187.0	19.0	156.0	1.0	.	+1	3	Atlas-SNP
DNMT1	1786	hgsc.bcm.edu	37	19	10260600	10260600	+	Silent	SNP	C	C	A	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	DNMT1,NS,carcinoma,0,1	DNMT1	NM_001130823	exon25	c.G2310T	p.A770A	GGTTTCCGCATCA	.	188.0	77.0	274.0	0.0	.	0	1	Atlas-SNP
EIF4G3	8672	hgsc.bcm.edu	37	1	21133864	21133864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001198801	exon35	c.C4814G	p.T1605R	AATGCCGTGACAG	.	272.0	36.0	273.0	0.0	.	.	.	Atlas-SNP
KRT8	3856	hgsc.bcm.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	KRT8,NS,carcinoma,0,5	KRT8	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	57.0	4.0	47.0	0.0	.	0	5	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.C453T	p.P151P	CCAGCCCACCTGC	.	80.0	22.0	65.0	0.0	0.500	0	2	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346622	39346622	+	Missense_Mutation	SNP	T	T	A	rs79470847	bycluster	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.T484A	p.C162S	CAGCCTTGCTGCC	.	94.0	31.0	63.0	0.0	0.500	0	2	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840	bycluster	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	38.0	9.0	19.0	0.0	0.500	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	37	16	30748991	30748991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_006662	exon34	c.C7630T	p.P2544S	AATCTCCCCTTGG	.	117.0	31.0	117.0	0.0	.	.	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140811125	140811125	+	Missense_Mutation	SNP	G	G	T	rs62344940		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MAML3_ENST00000509479,colon,carcinoma,+2,2	MAML3_ENST00000509479	NM_018717	exon2	c.C1465A	p.Q489K	GCTGTTGCTGTTG	.	52.0	8.0	68.0	2.0	.	+2	2	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	37	12	130184692	130184692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	TMEM132D,face,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.G631C	p.G211R	TCCTCCCGGCAAC	.	85.0	15.0	97.0	0.0	.	0	1	Atlas-SNP
GPR39	2863	hgsc.bcm.edu	37	2	133175132	133175132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001508	exon1	c.G517T	p.A173S	CTGTTTGCCATGG	.	76.0	4.0	117.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	CDC27_ENST00000531206,NS,carcinoma,0,10	CDC27_ENST00000531206	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	40.0	5.0	43.0	1.0	.	0	10	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	37	7	82582694	82582694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	Q9Y6V0-3,rectum,carcinoma,0,3	Q9Y6V0-3	NM_014510	exon5	c.A7575C	p.K2525N	TGTTGGTTTTTGT	.	110.0	33.0	100.0	0.0	.	0	3	Atlas-SNP
