Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SVIL	6840	hgsc.bcm.edu	37	10	29813507	29813508	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SVIL	NM_021738	exon14	c.2480_2481insC	p.Q827fs	.	.	172.0	11.0	167.0	0.0	.	226	.	Atlas-Indel
LARP4B	23185	hgsc.bcm.edu	37	10	871042	871045	+	Frame_Shift_Del	DEL	CTGG	CTGG	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	CTGG	CTGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LARP4B	NM_015155	exon13	c.1445_1448del	p.482_483del	.	.	53.0	19.0	67.0	0.0	.	110	.	Atlas-Indel
KCNC4	3749	hgsc.bcm.edu	37	1	110768693	110768694	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KCNC4	NM_001039574	exon3	c.1712_1713insC	p.R571fs	.	.	200.0	12.0	139.0	0.0	.	113	.	Atlas-Indel
DLX3	1747	hgsc.bcm.edu	37	17	48069062	48069063	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DLX3	NM_005220	exon3	c.683_684insC	p.R228fs	.	.	130.0	10.0	77.0	0.0	.	28	.	Atlas-Indel
NBEAL2	23218	hgsc.bcm.edu	37	3	47045654	47045656	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NBEAL2	NM_015175	exon37	c.5968_5970del	p.1990_1990del	.	.	162.0	13.0	113.0	0.0	.	267	.	Atlas-Indel
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571176	149571176	+	Missense_Mutation	SNP	C	C	T	rs11538585	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001100592	exon1	c.C169T	p.L57F	TTCGCCCTCCCGG	.	97.0	4.0	98.0	0.0	.	.	.	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	37	3	97852456	97852456	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001005338	exon1	c.A915C	p.L305F	AATGTTAAAAAAA	.	133.0	21.0	90.0	0.0	.	.	.	Atlas-SNP
NUAK2	81788	hgsc.bcm.edu	37	1	205274386	205274386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_030952	exon6	c.A764T	p.H255L	ATCTTATGGTCAT	.	97.0	14.0	72.0	0.0	.	.	.	Atlas-SNP
REPS2	9185	hgsc.bcm.edu	37	X	17047745	17047745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004726	exon5	c.G770A	p.R257Q	TTATCCGGGTAAG	.	174.0	18.0	98.0	0.0	.	.	.	Atlas-SNP
BIRC2	329	hgsc.bcm.edu	37	11	102221245	102221245	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001256163	exon2	c.C660T	p.C220C	AGCCTGCTTTGCC	.	129.0	10.0	128.0	0.0	.	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141294207	141294207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	LRP1B,NS,carcinoma,+2,1	LRP1B	NM_018557	exon46	c.A7585G	p.T2529A	CACAGGTGAGCTG	.	281.0	105.0	288.0	0.0	.	+2	1	Atlas-SNP
PDLIM1	9124	hgsc.bcm.edu	37	10	96997861	96997861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020992	exon7	c.T811C	p.F271L	TCACAAACACACC	.	66.0	31.0	74.0	0.0	.	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	37	2	170096096	170096096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	LRP2,colon,carcinoma,-1,1	LRP2	NM_004525	exon26	c.G4235A	p.R1412Q	GAGCACCGGAAAG	.	312.0	31.0	279.0	0.0	.	-1	1	Atlas-SNP
GRK1	6011	hgsc.bcm.edu	37	13	114325882	114325882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_002929	exon3	c.C896T	p.A299V	ACACGGCGCAGAT	.	25.0	8.0	30.0	0.0	.	.	.	Atlas-SNP
DYX1C1-CCPG1	100533483	hgsc.bcm.edu	37	15	55657628	55657628	+	RNA	SNP	T	T	G	rs200853518	bycluster	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	TTTTTTTTGTTTT	.	61.0	14.0	55.0	0.0	.	.	.	Atlas-SNP
PCIF1	63935	hgsc.bcm.edu	37	20	44574893	44574893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_022104	exon14	c.G1483T	p.V495L	CTGCCTGTGCATG	.	95.0	17.0	63.0	0.0	.	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	37	15	62212292	62212292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020821	exon57	c.A7451G	p.E2484G	GAGCTTTCTTGAC	.	157.0	15.0	178.0	0.0	.	.	.	Atlas-SNP
TMEM82	388595	hgsc.bcm.edu	37	1	16069671	16069671	+	Silent	SNP	G	G	A	rs138383534	bycluster;byfrequency;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001013641	exon3	c.G318A	p.T106T	GTCCACGCTGCTG	.	38.0	8.0	24.0	0.0	0.003	.	.	Atlas-SNP
CHST5	23563	hgsc.bcm.edu	37	16	75563911	75563911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_024533	exon3	c.C372A	p.C124X	CATGTCGCACAAA	.	116.0	9.0	109.0	0.0	.	.	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	37	12	20769229	20769229	+	Silent	SNP	C	C	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_000921	exon4	c.C1335G	p.T445T	CACCACCTCGGCC	.	336.0	32.0	108.0	0.0	.	.	.	Atlas-SNP
PRAMEF4	400735	hgsc.bcm.edu	37	1	12942173	12942173	+	Missense_Mutation	SNP	C	C	G	rs71232900		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PRAMEF4,NS,carcinoma,0,1	PRAMEF4	NM_001009611	exon3	c.G377C	p.C126S	AGGAAGCACCCAT	.	9.0	3.0	10.0	0.0	0.500	0	1	Atlas-SNP
CENPJ	55835	hgsc.bcm.edu	37	13	25480948	25480948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_018451	exon7	c.C1228A	p.Q410K	GCGGCTGGTCCTC	.	111.0	6.0	122.0	0.0	.	.	.	Atlas-SNP
NHS	4810	hgsc.bcm.edu	37	X	17750309	17750309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_198270	exon8	c.G4618A	p.D1540N	AGCACCGATGATG	.	420.0	170.0	248.0	0.0	.	.	.	Atlas-SNP
NDST1	3340	hgsc.bcm.edu	37	5	149932837	149932837	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001543	exon15	c.T2592G	p.Y864X	GCTGTATAAGATG	.	94.0	49.0	78.0	0.0	.	.	.	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	37	14	102904488	102904488	+	Missense_Mutation	SNP	C	C	G	rs368111236	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001172631	exon10	c.C2524G	p.L842V	GCCGGGCTGCGCT	.	61.0	4.0	60.0	0.0	.	.	.	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	37	22	42289198	42289198	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004599	exon12	c.C2286T	p.C762C	GCTCTGCCACCCC	.	94.0	5.0	72.0	0.0	.	.	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	37	9	139399283	139399283	+	Nonsense_Mutation	SNP	G	G	T	rs375196212	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_017617	exon26	c.C4860A	p.Y1620X	GCGGCCGTAGTAG	.	71.0	4.0	56.0	0.0	.	.	.	Atlas-SNP
GABRA4	2557	hgsc.bcm.edu	37	4	46994860	46994860	+	Missense_Mutation	SNP	G	G	A	rs201606797	by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_000809	exon2	c.C190T	p.R64C	CAGGACGCAGCCT	.	186.0	72.0	184.0	0.0	0.000	.	.	Atlas-SNP
MURC	347273	hgsc.bcm.edu	37	9	103340815	103340815	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	MURC,caecum,carcinoma,0,1	MURC	NM_001018116	exon1	c.C390T	p.F130F	CAAATTCCGCGTG	.	234.0	25.0	210.0	1.0	.	0	1	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	37	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G96A	p.E32E	GCCGGAGCCGGAA	.	212.0	15.0	122.0	0.0	.	0	1	Atlas-SNP
STK10	6793	hgsc.bcm.edu	37	5	171520918	171520918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005990	exon9	c.G1052T	p.S351I	TTGAGGCTTGGCG	.	164.0	78.0	141.0	0.0	.	.	.	Atlas-SNP
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11182927	11182927	+	RNA	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	GAAAAACCAGTAA	.	252.0	15.0	78.0	0.0	.	.	.	Atlas-SNP
GIT2	9815	hgsc.bcm.edu	37	12	110376285	110376285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_057169	exon18	c.C1903A	p.P635T	GAGTGGGGCTTGG	.	197.0	12.0	162.0	0.0	.	.	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53855197	53855197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ZNF845,bladder,carcinoma,+1,3	ZNF845	NM_138374	exon4	c.G1269A	p.M423I	TCAGATGTCATCC	.	119.0	5.0	145.0	1.0	.	+1	3	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	47.0	5.0	41.0	0.0	.	0	2	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46924440	46924440	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_030582	exon34	c.C3369A	p.P1123P	AGGCCCCCCAGGC	.	78.0	7.0	49.0	0.0	.	.	.	Atlas-SNP
RLTPR	146206	hgsc.bcm.edu	37	16	67683478	67683478	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001013838	exon20	c.C1875A	p.G625G	CGCGGGCGCCAAG	.	19.0	9.0	18.0	0.0	.	.	.	Atlas-SNP
BIRC2	329	hgsc.bcm.edu	37	11	102221221	102221221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001256163	exon2	c.A636G	p.I212M	TTATATAGGACCT	.	133.0	12.0	121.0	0.0	.	.	.	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056602	26056602	+	Missense_Mutation	SNP	G	G	C	rs200705328	bycluster;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005319	exon1	c.C55G	p.P19A	TTACAGGGGCCTT	.	282.0	100.0	170.0	0.0	0.000	.	.	Atlas-SNP
ANKRD20A11P	391267	hgsc.bcm.edu	37	21	15343568	15343568	+	RNA	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	AATTATAGCAAAT	.	92.0	6.0	55.0	0.0	.	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	37	10	61815643	61815643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020987	exon42	c.A12838G	p.K4280E	TTTCCTTGGTACT	.	120.0	63.0	143.0	0.0	.	.	.	Atlas-SNP
CALCOCO1	57658	hgsc.bcm.edu	37	12	54117502	54117502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020898	exon4	c.G325A	p.V109M	CACACACCTGGCC	.	198.0	36.0	141.0	0.0	.	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22156903	22156903	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_007153	exon4	c.G933A	p.K311K	GTAGGGCTTCTCT	.	115.0	58.0	95.0	0.0	.	.	.	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	37	X	54285766	54285766	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001002838	exon11	c.A2043G	p.V681V	TTGGGATACAGGC	.	115.0	36.0	61.0	0.0	.	.	.	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	37	16	2164211	2164211	+	Missense_Mutation	SNP	G	G	A	rs74488735		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PKD1,NS,haematopoietic_neoplasm,0,4	PKD1	NM_000296	exon11	c.C2813T	p.T938M	CTGGGCGTGGCGC	.	33.0	6.0	36.0	1.0	.	0	4	Atlas-SNP
