Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
DYRK2	8445	hgsc.bcm.edu	37	12	68051843	68051844	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	DYRK2,NS,carcinoma,0,1	DYRK2	NM_006482	exon3	c.1156_1157insG	p.R386fs	.	.	131.0	11.0	114.0	0.0	.	63	.	Atlas-Indel
SUPT5H	6829	hgsc.bcm.edu	37	19	39944127	39944128	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	SUPT5H	NM_001130825	exon3	c.207_208insC	p.K69fs	.	.	146.0	10.0	113.0	0.0	.	119	.	Atlas-Indel
ADC	113451	hgsc.bcm.edu	37	1	33583674	33583675	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	ADC	NM_052998	exon11	c.1201_1202insC	p.T401fs	.	.	87.0	10.0	109.0	0.0	.	38	.	Atlas-Indel
NNT	23530	hgsc.bcm.edu	37	5	43613185	43613186	+	Frame_Shift_Ins	INS	-	-	GG	rs146082847	bycluster;by1000genomes;alternate_allele	TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	NNT	NM_182977	exon3	c.327_328insGG	p.A109fs	.	.	146.0	14.0	171.0	0.0	.	92	.	Atlas-Indel
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346593	39346595	+	In_Frame_Del	DEL	CCT	CCT	-	rs377187211	bycluster	TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	KRTAP9-1_ENST00000398470,colon,carcinoma,0,2	KRTAP9-1	NM_001190460	exon1	c.454_456del	p.152_152del	.	.	72.0	20.0	64.0	0.0	.	34	.	Atlas-Indel
ZNF44	51710	hgsc.bcm.edu	37	19	12384353	12384353	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	ZNF44	NM_001164276	exon5	c.862delT	p.Y288fs	.	.	153.0	11.0	160.0	0.0	.	55	.	Atlas-Indel
CLINT1	9685	hgsc.bcm.edu	37	5	157233045	157233046	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	CLINT1	NM_014666	exon7	c.771_772del	p.257_258del	.	.	206.0	24.0	272.0	0.0	.	86	.	Atlas-Indel
KRT8	3856	hgsc.bcm.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	KRT8,NS,carcinoma,0,5	KRT8	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	54.0	7.0	38.0	0.0	.	0	5	Atlas-SNP
HHAT	55733	hgsc.bcm.edu	37	1	210577807	210577807	+	Splice_Site	SNP	G	G	C	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	.	NM_001122834	exon6	c.469-1G>C	.	TTTGTAGAGAAGG	.	94.0	7.0	116.0	0.0	.	.	.	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346622	39346622	+	Missense_Mutation	SNP	T	T	A	rs79470847	bycluster	TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.T484A	p.C162S	CAGCCTTGCTGCC	.	78.0	23.0	64.0	0.0	0.500	0	2	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2_ENST00000405201	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	56.0	10.0	58.0	0.0	.	0	11	Atlas-SNP
KRT8	3856	hgsc.bcm.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	KRT8,colon,carcinoma,0,2	KRT8	NM_001256282	exon2	c.C151T	p.R51C	AGGAGCGGCTGCT	.	48.0	7.0	36.0	0.0	0.055	0	2	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385869	58385869	+	Nonsense_Mutation	SNP	C	C	A	rs199684163		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	ZNF814,NS,carcinoma,0,1	ZNF814	NM_001144989	exon3	c.G889T	p.E297X	CACATTCATGTTT	.	49.0	12.0	42.0	1.0	.	0	1	Atlas-SNP
SNRNP200	23020	hgsc.bcm.edu	37	2	96940775	96940775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	.	NM_014014	exon45	c.C6386G	p.A2129G	GTCTCAGCTTCTT	.	99.0	5.0	127.0	0.0	.	.	.	Atlas-SNP
MCM4	4173	hgsc.bcm.edu	37	8	48874151	48874151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	.	NM_182746	exon3	c.A146C	p.Q49P	AGTTGCAGCCGAT	.	76.0	8.0	72.0	0.0	.	.	.	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	37	11	113078059	113078059	+	Silent	SNP	C	C	T	rs376337341		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	NCAM1_ENST00000401611,NS,carcinoma,0,3	NCAM1_ENST00000401611	NM_001242608	exon7	c.C705T	p.C235C	GGTGTGCGATGCC	.	69.0	4.0	82.0	0.0	.	0	3	Atlas-SNP
CSHL1	1444	hgsc.bcm.edu	37	17	61987579	61987579	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	.	NM_022579	exon4	c.C414T	p.D138D	ATCGCTGTCCGAG	.	194.0	12.0	241.0	0.0	.	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	37	2	211459325	211459325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	.	NM_001122633	exon13	c.G1276T	p.V426F	TCTCGGGTTGAGG	.	96.0	5.0	110.0	0.0	.	.	.	Atlas-SNP
HIF3A	64344	hgsc.bcm.edu	37	19	46828803	46828803	+	Silent	SNP	A	A	G	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	HIF3A_ENST00000377670,NS,carcinoma,0,2	HIF3A_ENST00000377670	NM_152795	exon11	c.A1347G	p.P449P	TCTCCCAGATGAA	.	62.0	13.0	70.0	1.0	.	0	2	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.C453T	p.P151P	CCAGCCCACCTGC	.	69.0	20.0	63.0	0.0	0.500	0	2	Atlas-SNP
ARHGAP42	143872	hgsc.bcm.edu	37	11	100814536	100814536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	.	NM_152432	exon10	c.G980C	p.C327S	AATCTTGTATCCG	.	74.0	14.0	123.0	0.0	.	.	.	Atlas-SNP
BMPR1A	657	hgsc.bcm.edu	37	10	88676951	88676951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	BMPR1A_ENST00000224764,NS,carcinoma,0,2	BMPR1A_ENST00000224764	NM_004329	exon9	c.G736A	p.G246R	CGATATGGAGAAG	.	232.0	21.0	206.0	1.0	.	0	2	Atlas-SNP
UFM1	51569	hgsc.bcm.edu	37	13	38934869	38934869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	.	NM_016617	exon6	c.G212T	p.G71V	AACATGGTTCAGA	.	75.0	4.0	116.0	0.0	.	.	.	Atlas-SNP
C20orf112	140688	hgsc.bcm.edu	37	20	31062436	31062436	+	Missense_Mutation	SNP	C	C	T	rs139591950	bycluster	TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	.	.	NM_001256798	exon5	c.G809A	p.R270Q	GGGCTCCGCATCC	.	50.0	4.0	60.0	0.0	0.000	.	.	Atlas-SNP
PRAMEF4	400735	hgsc.bcm.edu	37	1	12942173	12942173	+	Missense_Mutation	SNP	C	C	G	rs71232900		TCGA-VF-A8A9-01A-11D-A435-10	TCGA-VF-A8A9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0612a927-064e-4f49-9539-52c45867c5f6	3891e12d-7570-4058-8227-fdc2c5caa80a	PRAMEF4,NS,carcinoma,0,1	PRAMEF4	NM_001009611	exon3	c.G377C	p.C126S	AGGAAGCACCCAT	.	27.0	2.0	40.0	0.0	0.500	0	1	Atlas-SNP
