Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
JAK1	3716	hgsc.bcm.edu	37	1	65330611	65330611	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.,1	JAK1	NM_002227	exon8	c.1036delC	p.L346fs	.	.	137.0	10.0	142.0	0.0	.	209	.	Atlas-Indel
NHS	4810	hgsc.bcm.edu	37	X	17750309	17750309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_198270	exon8	c.G4618A	p.D1540N	AGCACCGATGATG	.	182.0	8.0	161.0	0.0	.	.	.	Atlas-SNP
OTUD4	54726	hgsc.bcm.edu	37	4	146085375	146085375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_017493	exon4	c.A150T	p.K50N	AAAATCTTTCCTG	.	136.0	16.0	174.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55593603	55593603	+	Missense_Mutation	SNP	T	T	C	rs121913235	bycluster	TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	KIT,NS,germ_cell_tumour,0,64	KIT	NM_000222	exon11	c.T1669C	p.W557R	GTACAGTGGAAGG	.	95.0	11.0	87.0	0.0	.	0	64	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789345	117789345	+	Missense_Mutation	SNP	G	G	C	rs61900347	bycluster;by1000genomes	TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	TMPRSS13_ENST00000445164,NS,carcinoma,0,2	TMPRSS13_ENST00000445164	NM_001206790	exon2	c.C230G	p.A77G	GCCTGGGCTGGAG	.	34.0	9.0	36.0	0.0	0.101	0	2	Atlas-SNP
PTCHD1	139411	hgsc.bcm.edu	37	X	23411681	23411681	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_173495	exon3	c.C2046G	p.F682L	CGTCTTCAATCCG	.	96.0	11.0	55.0	0.0	.	.	.	Atlas-SNP
WDR48	57599	hgsc.bcm.edu	37	3	39130788	39130788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_020839	exon16	c.G1647T	p.W549C	ACAATGGGTAATT	.	109.0	5.0	105.0	0.0	.	.	.	Atlas-SNP
TMEM51-AS1	200197	hgsc.bcm.edu	37	1	15439098	15439098	+	RNA	SNP	C	C	T	rs114844404	bycluster	TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	.	.	.	.	TTTTCTCCTCCCG	.	75.0	27.0	72.0	0.0	.	.	.	Atlas-SNP
GFRAL	389400	hgsc.bcm.edu	37	6	55216242	55216242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_207410	exon5	c.T562C	p.F188L	TTGGCTTTTTGTG	.	149.0	8.0	131.0	0.0	.	.	.	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	37	11	17170258	17170258	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_002645	exon4	c.C1404T	p.G468G	ATAGCTGCCAACA	.	77.0	8.0	59.0	0.0	.	.	.	Atlas-SNP
BTBD19	149478	hgsc.bcm.edu	37	1	45275921	45275921	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_001136537	exon2	c.G123A	p.E41E	GCAGGAGGTATTT	.	62.0	6.0	57.0	0.0	.	.	.	Atlas-SNP
NPC1	4864	hgsc.bcm.edu	37	18	21134853	21134853	+	Silent	SNP	C	C	T	rs367900403		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_000271	exon9	c.G1422A	p.P474P	GTTATACGGTGAA	.	139.0	6.0	178.0	0.0	.	.	.	Atlas-SNP
DNM1P46	196968	hgsc.bcm.edu	37	15	100331823	100331823	+	RNA	SNP	G	G	C	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	ENSG00000214394,NS,haematopoietic_neoplasm,-2,1	ENSG00000214394	.	.	.	.	CCAGAGGACCTGG	.	30.0	3.0	12.0	1.0	.	-2	1	Atlas-SNP
PIK3CD	5293	hgsc.bcm.edu	37	1	9779982	9779982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_005026	exon10	c.T1246C	p.C416R	CAGGACTGCCCCA	.	118.0	11.0	140.0	0.0	.	.	.	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	37	13	28942739	28942739	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_001160030	exon15	c.A2178G	p.S726S	TGACGATGATGAT	.	36.0	5.0	11.0	0.0	.	.	.	Atlas-SNP
HSP90B1	7184	hgsc.bcm.edu	37	12	104336993	104336993	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_003299	exon13	c.G1786C	p.V596L	GAAGGAGTGAAGT	.	97.0	11.0	80.0	0.0	.	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789342	117789342	+	Missense_Mutation	SNP	T	T	C	rs75037497	bycluster	TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_001206790	exon2	c.A233G	p.Q78R	GATGCCTGGGCTG	.	37.0	12.0	35.0	0.0	0.500	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	37	6	129785566	129785566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_000426	exon50	c.C7124T	p.A2375V	CGAGTGCTCTTCT	.	148.0	19.0	114.0	0.0	.	.	.	Atlas-SNP
CXorf48	54967	hgsc.bcm.edu	37	X	134294393	134294393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_017863	exon3	c.G367A	p.E123K	TATCTTCATTTAT	.	291.0	45.0	278.0	0.0	.	.	.	Atlas-SNP
