Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
FAM83F	113828	hgsc.bcm.edu	37	22	40391306	40391307	+	In_Frame_Ins	INS	-	-	CAAGGC	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM83F	NM_138435	exon1	c.260_261insCAAGGC	p.S87delinsSKA	.	.	20.0	10.0	9.0	0.0	.	29	.	Atlas-Indel
TCHH	7062	hgsc.bcm.edu	37	1	152082320	152082320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	TCHH,NS,carcinoma,0,5	TCHH	NM_007113	exon3	c.A3373G	p.R1125G	CCTCTCTCAGCAG	.	120.0	7.0	85.0	1.0	.	0	5	Atlas-SNP
CYTB	0	hgsc.bcm.edu	37	MT	14804	14804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	ENST00000361789	exon1	c.G58A	p.D20N	TTCATCGACCTCC	.	77.0	17.0	84.0	0.0	.	.	.	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274360	39274360	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	KRTAP4-11,NS,carcinoma,0,1	KRTAP4-11	NM_033059	exon1	c.T208A	p.C70S	AGATGCAGCATCT	.	34.0	4.0	34.0	2.0	.	0	1	Atlas-SNP
GOLGA2	2801	hgsc.bcm.edu	37	9	131020815	131020815	+	Missense_Mutation	SNP	C	C	A	rs62587120	bycluster	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	GOLGA2,NS,other,0,1	GOLGA2	NM_004486	exon21	c.G2127T	p.E709D	CTCCTCCTCATCC	.	37.0	4.0	34.0	0.0	.	0	1	Atlas-SNP
SCAF8	22828	hgsc.bcm.edu	37	6	155153803	155153803	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_014892	exon20	c.T3090C	p.P1030P	TAGACCTCCCCCT	.	104.0	5.0	79.0	0.0	.	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	37	16	47630436	47630436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000293	exon13	c.C1357G	p.L453V	GCAAAACTCCTGG	.	134.0	16.0	119.0	0.0	.	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	37	MT	14179	14179	+	Silent	SNP	A	A	G	rs28357671	bycluster;byfrequency;alternate_allele	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	ENST00000361681	exon1	c.T495C	p.Y165Y	TACAATATATACA	.	13.0	6.0	21.0	0.0	.	.	.	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	37	16	2156409	2156409	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000296	exon18	c.C7479G	p.F2493L	GCATTCGAAGTGC	.	32.0	6.0	27.0	0.0	.	.	.	Atlas-SNP
ZNF700	90592	hgsc.bcm.edu	37	19	12060269	12060269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001271848	exon4	c.A1439G	p.K480R	AATGTAAGGAATG	.	83.0	4.0	66.0	0.0	.	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88537315	88537315	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_014208	exon5	c.C3501T	p.D1167D	CAGCGACAGCAGC	.	97.0	8.0	69.0	0.0	.	.	.	Atlas-SNP
SART3	9733	hgsc.bcm.edu	37	12	108938917	108938917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_014706	exon4	c.C727T	p.R243W	TCACCCGAGCAGC	.	193.0	49.0	198.0	0.0	.	.	.	Atlas-SNP
ATF5	22809	hgsc.bcm.edu	37	19	50434258	50434258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_012068	exon3	c.C151T	p.L51F	GGCGGGCTTCCAG	.	66.0	14.0	86.0	0.0	.	.	.	Atlas-SNP
CHAF1A	10036	hgsc.bcm.edu	37	19	4409387	4409387	+	Silent	SNP	C	C	T	rs188842259	bycluster;by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_005483	exon3	c.C591T	p.G197G	GAGAGGCGACTCC	.	120.0	9.0	82.0	0.0	0.000	.	.	Atlas-SNP
C16orf88	400506	hgsc.bcm.edu	37	16	19722702	19722702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	C16orf88,NS,carcinoma,0,1	C16orf88	NM_001012991	exon3	c.A979G	p.I327V	GGTCTATGTGCGC	.	100.0	14.0	123.0	0.0	.	0	1	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89345676	89345676	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001256183	exon9	c.A7274T	p.D2425V	ATGGCATCCAGCT	.	131.0	15.0	110.0	0.0	.	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89345677	89345677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001256183	exon9	c.G7273T	p.D2425Y	TGGCATCCAGCTT	.	131.0	15.0	107.0	0.0	.	.	.	Atlas-SNP
NPR3	4883	hgsc.bcm.edu	37	5	32712263	32712263	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000908	exon1	c.G381A	p.K127K	CGCCAAGCCAGAC	.	109.0	22.0	139.0	0.0	.	.	.	Atlas-SNP
RAB3GAP1	22930	hgsc.bcm.edu	37	2	135920150	135920150	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001172435	exon20	c.A2315T	p.K772I	TCCAGAAACCTGC	.	113.0	11.0	116.0	0.0	.	.	.	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	37	6	83847668	83847668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_015018	exon21	c.G3907T	p.A1303S	AAACTTGCCAGAA	.	53.0	7.0	69.0	0.0	.	.	.	Atlas-SNP
CDR1	1038	hgsc.bcm.edu	37	X	139866459	139866459	+	Missense_Mutation	SNP	C	C	T	rs137994172	bycluster;byfrequency;by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_004065	exon1	c.G73A	p.V25I	AAGGTACGTCTTC	.	263.0	143.0	252.0	1.0	0.012	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547105	132547105	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_015409	exon47	c.G8193A	p.Q2731Q	GCAGCAGCAGCAG	.	101.0	9.0	96.0	0.0	.	.	.	Atlas-SNP
MGC72080	0	hgsc.bcm.edu	37	7	97599706	97599706	+	RNA	SNP	T	T	G	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	TTTTTTTTGGAGA	.	174.0	18.0	176.0	0.0	.	.	.	Atlas-SNP
