Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
YLPM1	56252	hgsc.bcm.edu	37	14	75265422	75265422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_019589	exon5	c.G3422T	p.S1141I	CTGGGAGCAGGGA	.	123.0	5.0	101.0	0.0	.	.	.	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	37	X	109694020	109694020	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020769	exon3	c.G175T	p.G59X	GACCCTGGAGGGA	.	102.0	5.0	94.0	0.0	.	.	.	Atlas-SNP
CES3	23491	hgsc.bcm.edu	37	16	67006271	67006271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_024922	exon11	c.C1304T	p.P435L	GAAGCCCTGTCTT	.	154.0	21.0	182.0	0.0	.	.	.	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	37	12	122359392	122359392	+	Missense_Mutation	SNP	G	G	A	rs114531812		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	WDR66,rectum,carcinoma,0,2	WDR66	NM_001178003	exon2	c.G181A	p.E61K	GAGGAGGAAGGGG	.	80.0	5.0	69.0	0.0	.	0	2	Atlas-SNP
HMOX2	3163	hgsc.bcm.edu	37	16	4555575	4555575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	HMOX2,colon,carcinoma,-1,1	HMOX2	NM_001127205	exon2	c.A50G	p.K17R	AAAAAAAGAACTC	.	44.0	3.0	41.0	1.0	.	-1	1	Atlas-SNP
SLC39A11	201266	hgsc.bcm.edu	37	17	70645032	70645032	+	Missense_Mutation	SNP	G	G	C	rs61736066	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001159770	exon9	c.C860G	p.A287G	GGCTCAGCCAGCA	.	61.0	6.0	68.0	0.0	.	.	.	Atlas-SNP
CRMP1	1400	hgsc.bcm.edu	37	4	5837737	5837737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001014809	exon11	c.C1528T	p.P510S	TCCTTGGGTACAG	.	142.0	24.0	154.0	0.0	.	.	.	Atlas-SNP
C11orf82	220042	hgsc.bcm.edu	37	11	82639955	82639955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_145018	exon4	c.G250T	p.G84C	TTTTTTGGTCTTA	.	82.0	4.0	81.0	0.0	.	.	.	Atlas-SNP
TTK	7272	hgsc.bcm.edu	37	6	80747723	80747723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	TTK,NS,NS,0,1	TTK	NM_003318	exon18	c.G2089A	p.D697N	ATCAAAGATATGT	.	218.0	19.0	225.0	2.0	.	0	1	Atlas-SNP
ZNF540	163255	hgsc.bcm.edu	37	19	38103317	38103317	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	ZNF540,NS,carcinoma,+1,1	ZNF540	NM_152606	exon5	c.G1136C	p.G379A	ATGCAGGTAAGAA	.	117.0	14.0	83.0	0.0	.	+1	1	Atlas-SNP
MTFR1	9650	hgsc.bcm.edu	37	8	66605961	66605961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014637	exon4	c.C248A	p.A83D	GGGTAGCCAAAGA	.	204.0	52.0	135.0	0.0	.	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	37	14	79746680	79746680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_138970	exon1	c.G46T	p.A16S	CGGCCGGCCTGGA	.	84.0	4.0	66.0	0.0	.	.	.	Atlas-SNP
FAF2	23197	hgsc.bcm.edu	37	5	175875462	175875462	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014613	exon1	c.G54A	p.L18L	GCTGCTGCAGTTT	.	68.0	17.0	77.0	0.0	.	.	.	Atlas-SNP
BTN2A2	10385	hgsc.bcm.edu	37	6	26384092	26384092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	BTN2A2_ENST00000432533,bladder,carcinoma,-1,2	BTN2A2_ENST00000432533	NM_181531	exon2	c.C43T	p.L15F	GCCTCCCTCCTCC	.	116.0	7.0	85.0	2.0	.	-1	2	Atlas-SNP
CCDC173	129881	hgsc.bcm.edu	37	2	170537595	170537595	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001085447	exon2	c.C216A	p.L72L	TGCACGGAGGCAT	.	178.0	8.0	170.0	0.0	.	.	.	Atlas-SNP
CCAR1	55749	hgsc.bcm.edu	37	10	70525822	70525822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	CCAR1,NS,carcinoma,0,1	CCAR1	NM_018237	exon17	c.G2284C	p.E762Q	AATAAAGAACATT	.	86.0	7.0	89.0	0.0	.	0	1	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	G	rs121913530	bycluster	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G34C	p.G12R	CGCCACCAGCTCC	.	336.0	122.0	210.0	0.0	.	+1	25136	Atlas-SNP
BDNF-AS	497258	hgsc.bcm.edu	37	11	27681201	27681201	+	RNA	SNP	C	C	T	rs182322619		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	TGCGCGCGCGCGT	.	94.0	8.0	114.0	0.0	.	.	.	Atlas-SNP
ZNF615	284370	hgsc.bcm.edu	37	19	52496353	52496353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001199324	exon7	c.A2009C	p.K670T	GAGAATTTTCCAC	.	189.0	24.0	154.0	0.0	.	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50350731	50350731	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020717	exon6	c.G3411A	p.E1137E	TTCTTCCTCCTCC	.	66.0	4.0	37.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45216150	45216150	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.A1677G	p.S559S	CAGAACTGAAAGA	.	79.0	5.0	72.0	1.0	.	0	2	Atlas-SNP
