Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
FOXM1	2305	hgsc.bcm.edu	37	12	2968602	2968644	+	Frame_Shift_Del	DEL	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	-	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	FOXM1	NM_202002	exon10	c.1567_1609del	p.523_537del	.	.	75.0	23.0	53.0	0.0	.	62	.	Pindel
IRF6	3664	hgsc.bcm.edu	37	1	209968742	209968742	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_006147	exon5	c.G401A	p.W134X	TCATCCCAGGGAG	.	90.0	13.0	83.0	0.0	.	.	.	Atlas-SNP
SLC6A7	6534	hgsc.bcm.edu	37	5	149578888	149578888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_014228	exon5	c.G682T	p.V228L	GTCATCGTGTTCC	.	71.0	4.0	78.0	0.0	.	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	rs199969873	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA	.	49.0	6.0	75.0	1.0	0.005	0	5	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	37	5	35753823	35753823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_024867	exon24	c.C3428T	p.T1143I	AGGACACTCTTGG	.	85.0	17.0	110.0	0.0	.	.	.	Atlas-SNP
ELMO2	63916	hgsc.bcm.edu	37	20	45014804	45014804	+	Silent	SNP	G	G	A	rs201990540	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	ELMO2,NS,carcinoma,-1,1	ELMO2	NM_182764	exon8	c.C636T	p.A212A	TTCCTCGGCTATC	.	79.0	6.0	77.0	2.0	0.002	-1	1	Atlas-SNP
ZNF439	90594	hgsc.bcm.edu	37	19	11978338	11978338	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_152262	exon3	c.G454T	p.E152X	TGTCAGGAATATG	.	123.0	5.0	109.0	0.0	.	.	.	Atlas-SNP
CCDC146	57639	hgsc.bcm.edu	37	7	76889506	76889506	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020879	exon8	c.G939A	p.K313K	GGTCAAGCTATTG	.	294.0	44.0	260.0	0.0	.	.	.	Atlas-SNP
ND2	0	hgsc.bcm.edu	37	MT	4920	4920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	ENST00000361453	exon1	c.G451A	p.V151M	CTAAACGTAAGCC	.	11.0	8.0	7.0	0.0	.	.	.	Atlas-SNP
BICD2	23299	hgsc.bcm.edu	37	9	95482926	95482926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001003800	exon4	c.C718G	p.L240V	CCTCCAGCTGCCG	.	181.0	19.0	179.0	0.0	.	.	.	Atlas-SNP
C10orf40	283025	hgsc.bcm.edu	37	10	61718595	61718595	+	RNA	SNP	T	T	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	.	.	.	.	TAAAATTGATTTT	.	197.0	36.0	186.0	0.0	.	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	37	5	139781730	139781730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	ANKHD1-EIF4EBP3,NS,carcinoma,0,2	ANKHD1-EIF4EBP3	NM_017978	exon1	c.G178A	p.G60S	AGCAGCGGCGGCG	.	29.0	3.0	28.0	1.0	.	0	2	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	37	16	9862936	9862936	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_000833	exon13	c.G2367A	p.E789E	CAGCTCCTCCATC	.	85.0	4.0	80.0	0.0	.	.	.	Atlas-SNP
SEC63	11231	hgsc.bcm.edu	37	6	108214783	108214783	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_007214	exon16	c.C1577G	p.S526X	TTTTTTGATTTAG	.	89.0	16.0	102.0	0.0	.	.	.	Atlas-SNP
FAM98B	283742	hgsc.bcm.edu	37	15	38776830	38776830	+	Silent	SNP	T	T	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_173611	exon8	c.T1272A	p.G424G	TGGTGGTGGTGGA	.	95.0	10.0	92.0	0.0	.	.	.	Atlas-SNP
CYP4Z1	199974	hgsc.bcm.edu	37	1	47533216	47533216	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_178134	exon1	c.C54A	p.I18I	GCTGATCCTCCTC	.	118.0	37.0	110.0	0.0	.	.	.	Atlas-SNP
FAM98B	283742	hgsc.bcm.edu	37	15	38776827	38776827	+	Silent	SNP	T	T	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	FAM98B_ENST00000397609,NS,carcinoma,0,1	FAM98B_ENST00000397609	NM_173611	exon8	c.T1269A	p.G423G	TGGTGGTGGTGGT	.	97.0	14.0	93.0	0.0	.	0	1	Atlas-SNP
KRTAP13-1	140258	hgsc.bcm.edu	37	21	31768921	31768921	+	Missense_Mutation	SNP	T	T	C	rs141793094	bycluster	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_181599	exon1	c.T517C	p.X173R	TACTATTGATCAT	.	170.0	47.0	164.0	0.0	0.000	.	.	Atlas-SNP
CPZ	8532	hgsc.bcm.edu	37	4	8621216	8621216	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001014447	exon11	c.G1831C	p.G611R	TCTTTGGGGGAGG	.	127.0	30.0	136.0	0.0	.	.	.	Atlas-SNP
OR52N4	390072	hgsc.bcm.edu	37	11	5776663	5776663	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	OR52N4,NS,carcinoma,0,1	OR52N4	NM_001005175	exon1	c.C693T	p.S231S	CCTCTCCTCAGCA	.	173.0	25.0	152.0	0.0	.	0	1	Atlas-SNP
FAM98B	283742	hgsc.bcm.edu	37	15	38776812	38776812	+	Silent	SNP	T	T	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_173611	exon8	c.T1254A	p.G418G	AGGTGGTGGTGGT	.	106.0	8.0	66.0	0.0	.	.	.	Atlas-SNP
NPR2	4882	hgsc.bcm.edu	37	9	35802591	35802591	+	Missense_Mutation	SNP	G	G	A	rs180950551	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_003995	exon11	c.G1802A	p.R601H	GTCCTCGTGGGAG	.	235.0	12.0	210.0	0.0	0.001	.	.	Atlas-SNP
HIRA	7290	hgsc.bcm.edu	37	22	19348846	19348846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	HIRA,NS,carcinoma,0,1	HIRA	NM_003325	exon17	c.G1999A	p.A667T	TCTCTGCGGTTAG	.	143.0	6.0	108.0	0.0	.	0	1	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126240963	126240963	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_024582	exon1	c.G3397T	p.G1133X	CCAAATGGAGAAG	.	114.0	24.0	96.0	0.0	.	.	.	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	37	19	17945938	17945938	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_000215	exon15	c.C2001T	p.I667I	CAGCTTGATGAAG	.	112.0	18.0	132.0	0.0	.	.	.	Atlas-SNP
KCNK3	3777	hgsc.bcm.edu	37	2	26950833	26950833	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_002246	exon2	c.C582T	p.F194F	CTGCTTCATCACC	.	184.0	35.0	150.0	0.0	.	.	.	Atlas-SNP
FAM98B	283742	hgsc.bcm.edu	37	15	38776815	38776815	+	Silent	SNP	T	T	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_173611	exon8	c.T1257A	p.G419G	TGGTGGTGGTGGT	.	99.0	12.0	60.0	0.0	.	.	.	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	37	2	108443536	108443536	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	RGPD4,caecum,carcinoma,-1,1	RGPD4	NM_182588	exon1	c.C67G	p.R23G	TCGCCTCGAAAGG	.	116.0	5.0	133.0	0.0	.	-1	1	Atlas-SNP
