Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KRT2	3849	hgsc.bcm.edu	37	12	53045639	53045640	+	In_Frame_Ins	INS	-	-	AAGCCGCTGCCGCCTCCA	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.,1	KRT2	NM_000423	exon1	c.288_289insTGGAGGCGGCAGCGGCTT	p.F96delinsFGGGSGF	.	.	154.0	28.0	179.0	0.0	.	94	.	Atlas-Indel
ANKRD35	148741	hgsc.bcm.edu	37	1	145561847	145561847	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	ANKRD35	NM_144698	exon10	c.1534delG	p.A512fs	.	.	156.0	11.0	183.0	0.0	.	96	.	Atlas-Indel
RP1L1	94137	hgsc.bcm.edu	37	8	10466010	10466010	+	Missense_Mutation	SNP	C	C	A	rs181718385	bycluster;byfrequency	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	RP1L1,NS,malignant_melanoma,0,1	RP1L1	NM_178857	exon4	c.G5598T	p.E1866D	CTGGGCCTCCCCT	.	70.0	13.0	58.0	0.0	0.008	0	1	Atlas-SNP
ZNF254	9534	hgsc.bcm.edu	37	19	24310155	24310155	+	Silent	SNP	A	A	G	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_203282	exon4	c.A1353G	p.K451K	TACTAAACATAAG	.	84.0	5.0	72.0	0.0	.	.	.	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	37	19	56223293	56223293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_176820	exon8	c.G2716A	p.A906T	CTGCGGCGATGTC	.	128.0	8.0	147.0	0.0	.	.	.	Atlas-SNP
RNR1	6052	hgsc.bcm.edu	37	MT	754	754	+	RNA	SNP	A	A	G	rs201831870	alternate_allele	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	GGAACAAGCATCA	.	278.0	123.0	234.0	0.0	.	.	.	Atlas-SNP
DENND5B	160518	hgsc.bcm.edu	37	12	31632964	31632964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	DENND5B,NS,carcinoma,+2,1	DENND5B	NM_144973	exon3	c.A463T	p.M155L	AGTCCATACTGCA	.	168.0	7.0	183.0	0.0	.	+2	1	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179451955	179451955	+	Missense_Mutation	SNP	G	G	C	rs370506995	alternate_allele	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	TTN_ENST00000359218,NS,carcinoma,0,5	TTN_ENST00000359218	NM_001267550	exon307	c.C63983G	p.T21328S	AGATTGGTTACAT	.	181.0	18.0	161.0	1.0	.	0	5	Atlas-SNP
NRAP	4892	hgsc.bcm.edu	37	10	115356933	115356933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	NRAP,uveal_tract,malignant_melanoma,-1,1	NRAP	NM_001261463	exon37	c.G4343A	p.R1448H	TTTTTACGGTACT	.	85.0	4.0	99.0	0.0	.	-1	1	Atlas-SNP
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578004	1578004	+	RNA	SNP	T	T	C	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	CTGAGTTCCCTTG	.	137.0	6.0	104.0	0.0	.	.	.	Atlas-SNP
ICT1	3396	hgsc.bcm.edu	37	17	73016470	73016470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	ICT1,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ICT1	NM_001545	exon4	c.C346T	p.R116W	CCCGTGCGGCAGA	.	149.0	10.0	166.0	0.0	.	0	1	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466019	10466019	+	Silent	SNP	A	A	T	rs199577777	byfrequency	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	RP1L1,NS,carcinoma,-1,1	RP1L1	NM_178857	exon4	c.T5589A	p.A1863A	CCCTTCAGCCTCC	.	67.0	10.0	59.0	0.0	0.007	-1	1	Atlas-SNP
DUSP5	1847	hgsc.bcm.edu	37	10	112270021	112270021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_004419	exon4	c.G992T	p.G331V	GCCAAGGGGAGGC	.	90.0	5.0	113.0	0.0	.	.	.	Atlas-SNP
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11243716	11243716	+	RNA	SNP	T	T	C	rs199540487	bycluster	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	CACACATATATAT	.	9.0	4.0	6.0	0.0	.	.	.	Atlas-SNP
OR10K1	391109	hgsc.bcm.edu	37	1	158435624	158435624	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	OR10K1,NS,carcinoma,0,1	OR10K1	NM_001004473	exon1	c.C273A	p.T91T	GAAGACCATTTCT	.	174.0	11.0	175.0	0.0	.	0	1	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	37	16	88800398	88800398	+	Missense_Mutation	SNP	G	G	C	rs62639697	byfrequency	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001142864	exon17	c.C2245G	p.Q749E	CCTCCTGCTGCTG	.	46.0	15.0	47.0	0.0	0.966	.	.	Atlas-SNP
DLGAP5	9787	hgsc.bcm.edu	37	14	55655696	55655696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_014750	exon2	c.C202A	p.Q68K	GCCCTTGAGATGT	.	232.0	12.0	228.0	0.0	.	.	.	Atlas-SNP
SGK223	0	hgsc.bcm.edu	37	8	8234017	8234017	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001080826	exon2	c.G1902A	p.Q634Q	CCGGCACTGACGA	.	151.0	10.0	135.0	0.0	.	.	.	Atlas-SNP
TMIGD2	126259	hgsc.bcm.edu	37	19	4292623	4292623	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_144615	exon5	c.A822G	p.K274K	GAACCCTTTTGGC	.	93.0	4.0	81.0	0.0	.	.	.	Atlas-SNP
