Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SMCHD1	23347	hgsc.bcm.edu	37	18	2688481	2688483	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	SMCHD1	NM_015295	exon6	c.727_729del	p.243_243del	.	.	89.0	10.0	115.0	0.0	.	88	.	Atlas-Indel
ITSN1	6453	hgsc.bcm.edu	37	21	35144472	35144491	+	Frame_Shift_Del	DEL	GCCCAGCTGGAGCGGGCGGA	GCCCAGCTGGAGCGGGCGGA	-	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	GCCCAGCTGGAGCGGGCGGA	GCCCAGCTGGAGCGGGCGGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	ITSN1	NM_001001132	exon12	c.1149_1168del	p.383_390del	.	.	149.0	18.0	123.0	0.0	.	166	.	Atlas-Indel
BCYRN1	618	hgsc.bcm.edu	37	X	70617455	70617455	+	RNA	SNP	C	C	T	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	.	.	.	.	CAACTTCCAGAGT	.	42.0	7.0	34.0	0.0	.	.	.	Atlas-SNP
SLC5A8	160728	hgsc.bcm.edu	37	12	101603313	101603313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	SLC5A8,colon,carcinoma,0,1	SLC5A8	NM_145913	exon1	c.C314A	p.P105Q	AACACCGGGAGGA	.	95.0	5.0	79.0	1.0	.	0	1	Atlas-SNP
PEX5	5830	hgsc.bcm.edu	37	12	7354887	7354887	+	Silent	SNP	C	C	T	rs140332077	bycluster;by1000genomes	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001131023	exon8	c.C738T	p.S246S	GGAGTCCGGTGCA	.	218.0	33.0	122.0	0.0	0.000	.	.	Atlas-SNP
TAZ	6901	hgsc.bcm.edu	37	X	153648387	153648387	+	Silent	SNP	T	T	C	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_000116	exon8	c.T600C	p.I200I	CCTGATTGCTGAG	.	223.0	22.0	149.0	0.0	.	.	.	Atlas-SNP
RAP1GAP2	23108	hgsc.bcm.edu	37	17	2921439	2921439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_015085	exon18	c.C1579T	p.L527F	GGCAGCCTCAGCG	.	79.0	16.0	106.0	0.0	.	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001162895	exon3	c.G226A	p.D76N	CTTCATCCTTCTT	.	91.0	5.0	125.0	0.0	.	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T	rs121913527		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	KRAS_ENST00000256078,colon,carcinoma,+1,137	KRAS_ENST00000256078	NM_004985	exon4	c.G436A	p.A146T	TCTTTGCTGATGT	.	134.0	26.0	74.0	1.0	.	+1	137	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	37	13	46170737	46170737	+	Missense_Mutation	SNP	T	T	C	rs117004691	bycluster	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_182542	exon3	c.A404G	p.E135G	TCCTCCTCCAGAT	.	167.0	9.0	228.0	0.0	.	.	.	Atlas-SNP
ITIH4	3700	hgsc.bcm.edu	37	3	52852482	52852482	+	Silent	SNP	G	G	T	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_002218	exon18	c.C2148A	p.I716I	ACCTTCGATTTTC	.	119.0	5.0	96.0	0.0	.	.	.	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	37	5	180048756	180048756	+	Silent	SNP	G	G	A	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_182925	exon13	c.C1806T	p.H602H	GTTCCCGTGCGCA	.	73.0	4.0	85.0	0.0	.	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	37	MT	6170	6170	+	Silent	SNP	C	C	T	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	ENST00000361624	exon1	c.C267T	p.A89A	CGGTGCCCCCGAT	.	12.0	8.0	25.0	0.0	.	.	.	Atlas-SNP
MFF	56947	hgsc.bcm.edu	37	2	228194321	228194321	+	Splice_Site	SNP	G	G	T	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	.	.	.	.	TTTACAGCTGGAA	.	129.0	8.0	109.0	0.0	.	.	.	Atlas-SNP
FIBP	9158	hgsc.bcm.edu	37	11	65651461	65651461	+	Missense_Mutation	SNP	C	C	T	rs140853801	bycluster	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	FIBP,colon,carcinoma,0,1	FIBP	NM_198897	exon10	c.G1079A	p.R360H	TACAGGCGCAGGA	.	75.0	10.0	89.0	0.0	0.000	0	1	Atlas-SNP
C15orf55	256646	hgsc.bcm.edu	37	15	34640735	34640735	+	Silent	SNP	T	T	C	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_175741	exon2	c.T582C	p.T194T	GGCCACTCTATCC	.	64.0	4.0	72.0	0.0	.	.	.	Atlas-SNP
RUVBL2	10856	hgsc.bcm.edu	37	19	49502588	49502588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_006666	exon2	c.A25G	p.K9E	ACAACCAAAGTCC	.	204.0	34.0	206.0	0.0	.	.	.	Atlas-SNP
DLX6-AS1	285987	hgsc.bcm.edu	37	7	96637151	96637151	+	RNA	SNP	C	C	T	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	.	.	.	.	TAATTCCCGAGAA	.	47.0	9.0	55.0	0.0	.	.	.	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	37	3	37340359	37340359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001172713	exon9	c.C916G	p.L306V	GAAACACTCCAGC	.	253.0	50.0	285.0	0.0	.	.	.	Atlas-SNP
ITSN1	6453	hgsc.bcm.edu	37	21	35147283	35147283	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001001132	exon14	c.G1467C	p.K489N	TAAAAAGCATCAA	.	183.0	37.0	164.0	0.0	.	.	.	Atlas-SNP
