Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ATCAY	85300	hgsc.bcm.edu	37	19	3909500	3909500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	ATCAY	NM_033064	exon7	c.663delC	p.S221fs	.	.	54.0	14.0	82.0	0.0	.	84	.	Pindel,Atlas-Indel
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346593	39346595	+	In_Frame_Del	DEL	CCT	CCT	-	rs377187211	bycluster	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	KRTAP9-1_ENST00000398470,colon,carcinoma,0,2	KRTAP9-1	NM_001190460	exon1	c.454_456del	p.152_152del	.	.	76.0	26.0	51.0	0.0	.	34	.	Atlas-Indel
B3GNT8	374907	hgsc.bcm.edu	37	19	41932262	41932262	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_198540	exon3	c.G422C	p.S141T	GAGCAGCTGGAGA	.	68.0	23.0	113.0	0.0	.	.	.	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	37	18	9886918	9886918	+	Missense_Mutation	SNP	A	A	G	rs142946305	bycluster	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	TXNDC2_ENST00000306084,NS,carcinoma,0,4	TXNDC2_ENST00000306084	NM_001098529	exon2	c.A442G	p.N148D	GAGAGTAACATCC	.	71.0	4.0	120.0	1.0	0.000	0	4	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45232075	45232075	+	Missense_Mutation	SNP	A	A	T	rs199711781	bycluster	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon8	c.T920A	p.V307E	TCAATTACAGGAG	.	89.0	4.0	74.0	1.0	0.001	0	2	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	37	4	147560484	147560484	+	Silent	SNP	C	C	A	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_004575	exon1	c.C192A	p.G64G	CGGCGGCGGCGGC	.	80.0	6.0	70.0	0.0	.	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	37	6	33638140	33638140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_002224	exon19	c.G2228T	p.R743L	TGGACCGCCAGTA	.	60.0	4.0	89.0	0.0	.	.	.	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346622	39346622	+	Missense_Mutation	SNP	T	T	A	rs79470847	bycluster	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.T484A	p.C162S	CAGCCTTGCTGCC	.	87.0	22.0	67.0	0.0	0.500	0	2	Atlas-SNP
BROX	148362	hgsc.bcm.edu	37	1	222903028	222903028	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_144695	exon10	c.C823T	p.Q275X	TCTCTCCAAGAAG	.	95.0	8.0	124.0	0.0	.	.	.	Atlas-SNP
OR2T4	127074	hgsc.bcm.edu	37	1	248525639	248525639	+	Missense_Mutation	SNP	A	A	C	rs76878172	alternate_allele	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	OR2T4,brain,glioma,0,1	OR2T4	NM_001004696	exon1	c.A757C	p.I253L	TTACTCATCCTCC	.	487.0	21.0	490.0	2.0	.	0	1	Atlas-SNP
ENTPD1-AS1	0	hgsc.bcm.edu	37	10	97684298	97684298	+	RNA	SNP	T	T	A	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	ATATATTTTCCTT	.	134.0	8.0	168.0	0.0	.	.	.	Atlas-SNP
ELMO2	63916	hgsc.bcm.edu	37	20	45017782	45017782	+	Silent	SNP	C	C	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_182764	exon6	c.G321A	p.L107L	CTTGGCCAGCTCC	.	94.0	19.0	64.0	0.0	.	.	.	Atlas-SNP
ZNF276	92822	hgsc.bcm.edu	37	16	89793728	89793728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_001113525	exon5	c.G1048T	p.D350Y	TCGGATGATCGGG	.	117.0	5.0	128.0	0.0	.	.	.	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	KRTAP9-1_ENST00000398470,caecum,carcinoma,0,2	KRTAP9-1_ENST00000398470	NM_001190460	exon1	c.C453T	p.P151P	CCAGCCCACCTGC	.	77.0	26.0	52.0	0.0	0.500	0	2	Atlas-SNP
RNR2	6053	hgsc.bcm.edu	37	MT	1824	1824	+	RNA	SNP	T	T	C	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	ATAATATAGCAAG	.	23.0	8.0	23.0	0.0	.	.	.	Atlas-SNP
