Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SPAG1	6674	hgsc.bcm.edu	37	8	101232531	101232532	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	SPAG1	NM_172218	exon13	c.1559_1560del	p.520_520del	.	.	108.0	15.0	122.0	0.0	.	80	.	Atlas-Indel
KCNN3	3782	hgsc.bcm.edu	37	1	154842235	154842236	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCTGCT	rs66925179		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	KCNN3	NM_001204087	exon1	c.206_207insAGCAGCAGCAGCAGC	p.Q69delinsQQQQQQ	.	.	70.0	12.0	66.0	0.0	.	141	.	Atlas-Indel
PPT2	9374	hgsc.bcm.edu	37	6	32123529	32123533	+	Frame_Shift_Del	DEL	CCTCT	CCTCT	-	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	CCTCT	CCTCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	PPT2	NM_138717	exon4	c.419_423del	p.140_141del	.	.	145.0	20.0	187.0	0.0	.	19	.	Atlas-Indel
RNF8	9025	hgsc.bcm.edu	37	6	37336599	37336599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_003958	exon3	c.G580A	p.E194K	AAAGGTGAAGTGG	.	121.0	25.0	141.0	0.0	.	.	.	Atlas-SNP
HOXD9	3235	hgsc.bcm.edu	37	2	176988290	176988290	+	Missense_Mutation	SNP	C	C	A	rs200417886		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014213	exon1	c.C794A	p.P265Q	CGCAGCCGCAGCA	.	114.0	6.0	115.0	0.0	.	.	.	Atlas-SNP
SGTB	54557	hgsc.bcm.edu	37	5	65004355	65004355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	SGTB,trunk,malignant_melanoma,0,1	SGTB	NM_019072	exon4	c.C235T	p.P79S	CTTCAGGCACTGA	.	72.0	30.0	100.0	0.0	.	0	1	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	37	2	32690161	32690161	+	Missense_Mutation	SNP	C	C	T	rs368963586	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	BIRC6_ENST00000421745,NS,carcinoma,+2,2	BIRC6_ENST00000421745	NM_016252	exon26	c.C5285T	p.A1762V	CCCTTGCAATTTC	.	567.0	118.0	575.0	0.0	.	+2	2	Atlas-SNP
LMX1B	4010	hgsc.bcm.edu	37	9	129455807	129455807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	LMX1B_ENST00000355497,bladder,carcinoma,0,2	LMX1B_ENST00000355497	NM_001174146	exon5	c.G746T	p.R249L	AGGTCCGAGAGAC	.	64.0	4.0	51.0	0.0	.	0	2	Atlas-SNP
SNX29P2	440352	hgsc.bcm.edu	37	16	29375983	29375983	+	RNA	SNP	T	T	C	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	TTTTTTTTCTTTT	.	82.0	4.0	95.0	0.0	.	.	.	Atlas-SNP
PPWD1	23398	hgsc.bcm.edu	37	5	64867809	64867809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015342	exon5	c.A665G	p.H222R	AACTCCATACATC	.	195.0	68.0	186.0	0.0	.	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23909357	23909357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014363	exon10	c.C8658G	p.H2886Q	TGCAAAGTGGCCA	.	82.0	27.0	100.0	0.0	.	.	.	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	37	2	182358131	182358131	+	Silent	SNP	G	G	A	rs368002151		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_000885	exon11	c.G1233A	p.S411S	GATCTCGTCAACC	.	90.0	12.0	98.0	0.0	.	.	.	Atlas-SNP
ZNF233	353355	hgsc.bcm.edu	37	19	44778517	44778517	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001207005	exon5	c.G1704T	p.V568V	TGATGTGTGTGGG	.	96.0	19.0	94.0	0.0	.	.	.	Atlas-SNP
FAM194A	131831	hgsc.bcm.edu	37	3	150396273	150396273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_152394	exon10	c.G1180T	p.D394Y	CAATGTCATCAAT	.	377.0	49.0	261.0	0.0	.	.	.	Atlas-SNP
MIR548F1	100302192	hgsc.bcm.edu	37	1	186120944	186120944	+	RNA	SNP	A	A	C	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	AGAAAAATACGTG	.	106.0	24.0	127.0	0.0	.	.	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	37	17	3999200	3999200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015113	exon11	c.C1838T	p.A613V	TCTTCCGCACAAA	.	118.0	30.0	132.0	0.0	.	.	.	Atlas-SNP
SV2B	9899	hgsc.bcm.edu	37	15	91810817	91810817	+	Silent	SNP	G	G	T	rs368688126	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014848	exon9	c.G1152T	p.G384G	GATGGGGCCCTAC	.	133.0	39.0	192.0	0.0	.	.	.	Atlas-SNP
ALG9	79796	hgsc.bcm.edu	37	11	111728380	111728380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001077690	exon7	c.G646A	p.V216M	CCAGCACAGCAAT	.	37.0	14.0	75.0	0.0	.	.	.	Atlas-SNP
KIAA1586	57691	hgsc.bcm.edu	37	6	56919177	56919177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_020931	exon4	c.T1880A	p.I627N	AAGATATTTTTAA	.	202.0	37.0	237.0	0.0	.	.	.	Atlas-SNP
C16orf89	146556	hgsc.bcm.edu	37	16	5106086	5106086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001098514	exon5	c.C731A	p.A244D	GGGTAGGCGTATC	.	88.0	4.0	123.0	0.0	.	.	.	Atlas-SNP
