Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SUGT1	10910	hgsc.bcm.edu	37	13	53239790	53239791	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	SUGT1	NM_001130912	exon10	c.536_537del	p.179_179del	.	.	145.0	22.0	197.0	0.0	.	37	.	Atlas-Indel
UBD	10537	hgsc.bcm.edu	37	6	29524057	29524058	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	UBD	NM_006398	exon2	c.98_99insA	p.I33fs	.	.	134.0	10.0	133.0	0.0	.	13	.	Atlas-Indel
MUC4	4585	hgsc.bcm.edu	37	3	195505877	195505877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	MUC4_ENST00000463781,NS,carcinoma,+1,1	MUC4_ENST00000463781	NM_018406	exon2	c.C12574T	p.P4192S	GAAGAGGGGTGGT	.	69.0	8.0	74.0	2.0	.	+1	1	Atlas-SNP
SPTLC3	55304	hgsc.bcm.edu	37	20	13107267	13107267	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_018327	exon9	c.G1182T	p.S394S	TCACTCGCATAGT	.	106.0	5.0	124.0	0.0	.	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38377435	38377435	+	Silent	SNP	T	T	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_031951	exon6	c.A6759G	p.E2253E	CTCTTCTTCCTCC	.	88.0	6.0	116.0	0.0	.	.	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	37	3	124732413	124732413	+	Silent	SNP	A	A	G	rs369359384		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_020733	exon6	c.T2010C	p.S670S	TGAAGAAGAAGAA	.	68.0	7.0	56.0	0.0	.	.	.	Atlas-SNP
TRMT44	152992	hgsc.bcm.edu	37	4	8470016	8470016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_152544	exon9	c.A1870G	p.K624E	GGTGGAAAGCAAT	.	66.0	16.0	79.0	0.0	.	.	.	Atlas-SNP
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	KRTAP1-1,NS,malignant_melanoma,0,1	KRTAP1-1	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT	.	70.0	3.0	75.0	1.0	.	0	1	Atlas-SNP
SYBU	55638	hgsc.bcm.edu	37	8	110587804	110587804	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001099752	exon8	c.G1323A	p.L441L	ATCGAACAAATCT	.	153.0	24.0	133.0	0.0	.	.	.	Atlas-SNP
SKAP2	8935	hgsc.bcm.edu	37	7	26883702	26883702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_003930	exon4	c.C254A	p.T85N	GAAATAGTGTCTG	.	76.0	4.0	54.0	0.0	.	.	.	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	37	16	87451243	87451243	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	ZCCHC14,caecum,carcinoma,-1,2	ZCCHC14	NM_015144	exon8	c.G795A	p.A265A	GCTGCCCGCATGG	.	47.0	6.0	74.0	0.0	.	-1	2	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38377414	38377414	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_031951	exon6	c.G6780A	p.E2260E	TACCTCCTCCTCC	.	86.0	16.0	116.0	0.0	.	.	.	Atlas-SNP
TOX2	84969	hgsc.bcm.edu	37	20	42694570	42694570	+	Silent	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	TOX2_ENST00000348077,colon,carcinoma,0,2	TOX2_ENST00000348077	NM_001098797	exon7	c.A1179G	p.P393P	GCCGCCACCCTCC	.	53.0	3.0	48.0	0.0	.	0	2	Atlas-SNP
ONECUT3	390874	hgsc.bcm.edu	37	19	1775247	1775247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	ONECUT3,colon,carcinoma,-2,1	ONECUT3	NM_001080488	exon2	c.A1288G	p.I430V	ACGCTGATCGCCA	.	131.0	36.0	134.0	0.0	.	-2	1	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001162895	exon3	c.G226A	p.D76N	CTTCATCCTTCTT	.	70.0	6.0	109.0	0.0	.	.	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	37	3	124732419	124732419	+	Silent	SNP	A	A	G	rs202026679	bycluster	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_020733	exon6	c.T2004C	p.S668S	AGAAGAAGAGGAG	.	73.0	9.0	56.0	0.0	.	.	.	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52779018	52779018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_033045	exon1	c.G352A	p.G118S	GGCCACCAAAGCC	.	94.0	7.0	117.0	0.0	.	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	37	10	105160253	105160253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_014976	exon3	c.G202T	p.A68S	AAGTCCGCAAGAG	.	74.0	4.0	79.0	0.0	.	.	.	Atlas-SNP
CCDC41	51134	hgsc.bcm.edu	37	12	94796963	94796963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_016122	exon5	c.T400C	p.F134L	TCCTAAAACGTTC	.	65.0	4.0	47.0	0.0	.	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	rs121913240	bycluster	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG	.	152.0	11.0	101.0	0.0	.	+1	429	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38377417	38377417	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_031951	exon6	c.G6777A	p.E2259E	CTCCTCCTCCTCC	.	88.0	15.0	124.0	0.0	.	.	.	Atlas-SNP
SLC35G6	643664	hgsc.bcm.edu	37	17	7386120	7386120	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001102614	exon2	c.G817C	p.A273P	AGCTATGCGGTCA	.	119.0	9.0	157.0	0.0	.	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195508975	195508975	+	Missense_Mutation	SNP	G	G	T	rs76458870	byfrequency	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C9476A	p.S3159Y	GCTGAGGAAGTGT	.	70.0	6.0	60.0	1.0	0.500	0	1	Atlas-SNP
HMGXB4	10042	hgsc.bcm.edu	37	22	35661554	35661554	+	Silent	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001003681	exon5	c.G1173A	p.K391K	AAAAAAGAAAAAA	.	146.0	12.0	104.0	0.0	.	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129922	175129922	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001162895	exon3	c.T228G	p.D76E	TTCTTCATCCTTC	.	71.0	6.0	109.0	0.0	.	.	.	Atlas-SNP
ALDH16A1	126133	hgsc.bcm.edu	37	19	49967466	49967466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_153329	exon10	c.G1277A	p.G426D	GCGGGGGCAGCGC	.	31.0	6.0	43.0	0.0	.	.	.	Atlas-SNP
