Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
RP1L1	94137	hgsc.bcm.edu	37	8	10468935	10468935	+	Silent	SNP	C	C	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_178857	exon4	c.G2673T	p.G891G	GCGTGTCCCCTCC	.	27.0	12.0	33.0	0.0	.	.	.	Atlas-SNP
SLC25A4	291	hgsc.bcm.edu	37	4	186066080	186066080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001151	exon2	c.A274G	p.K92E	GCCTTCAAGGACA	.	71.0	15.0	157.0	0.0	.	.	.	Atlas-SNP
OR1B1	347169	hgsc.bcm.edu	37	9	125391778	125391778	+	Missense_Mutation	SNP	C	C	A	rs77073101	bycluster	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001004450	exon1	c.G37T	p.V13F	AAAAAACCGGAGA	.	72.0	6.0	74.0	0.0	.	.	.	Atlas-SNP
TULP4	56995	hgsc.bcm.edu	37	6	158873228	158873228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020245	exon5	c.A787G	p.T263A	AGCTTCACCTCGG	.	104.0	10.0	128.0	0.0	.	.	.	Atlas-SNP
RNU6-71	100873774	hgsc.bcm.edu	37	6	56504477	56504477	+	RNA	SNP	T	T	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	AAGGTTTAAAAAA	.	149.0	7.0	158.0	0.0	.	.	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	37	12	40713816	40713816	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_198578	exon34	c.T4854A	p.C1618X	AGGTTGTCCAAAA	.	376.0	75.0	305.0	0.0	.	.	.	Atlas-SNP
SIRT6	51548	hgsc.bcm.edu	37	19	4179130	4179130	+	Silent	SNP	G	G	A	rs200245532		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	SIRT6,NS,carcinoma,-2,1	SIRT6	NM_016539	exon3	c.C348T	p.D116D	GAGCCCGTCCACG	.	34.0	8.0	49.0	0.0	.	-2	1	Atlas-SNP
OR2L1P	26247	hgsc.bcm.edu	37	1	248153755	248153755	+	RNA	SNP	A	A	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	CTACTTAGTCAGC	.	134.0	7.0	169.0	0.0	.	.	.	Atlas-SNP
RETSAT	54884	hgsc.bcm.edu	37	2	85571180	85571180	+	Missense_Mutation	SNP	G	G	A	rs149307146	bycluster	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	RETSAT,NS,carcinoma,0,1	RETSAT	NM_017750	exon9	c.C1475T	p.S492F	ACAAAGGAGTTTT	.	154.0	8.0	171.0	1.0	0.000	0	1	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21230922	21230922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_000384	exon26	c.G8818A	p.G2940R	GTGTTCCCTCATC	.	176.0	50.0	217.0	0.0	.	.	.	Atlas-SNP
ZBTB47	92999	hgsc.bcm.edu	37	3	42700717	42700717	+	Silent	SNP	A	A	G	rs72864072	bycluster;byfrequency;by1000genomes	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_145166	exon2	c.A870G	p.E290E	GGAAGAAGAGGAA	.	4.0	4.0	8.0	0.0	0.173	.	.	Atlas-SNP
LRRC36	55282	hgsc.bcm.edu	37	16	67416139	67416139	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	LRRC36,scalp,carcinoma,+2,1	LRRC36	NM_018296	exon13	c.T2034A	p.H678Q	TCTCCATGAAAGT	.	113.0	31.0	130.0	0.0	.	+2	1	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	37	2	170115533	170115533	+	Splice_Site	SNP	A	A	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_004525	exon18	c.2513+2T>G	.	ACACTTACCCGGC	.	222.0	67.0	186.0	0.0	.	.	.	Atlas-SNP
UCK1	83549	hgsc.bcm.edu	37	9	134404415	134404415	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001261451	exon5	c.C534T	p.D178D	GCGCACGTCCCGG	.	67.0	9.0	93.0	0.0	.	.	.	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	37	12	18544127	18544127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_004570	exon14	c.G1944T	p.E648D	TGAAGAGCCACTA	.	113.0	6.0	53.0	0.0	.	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	37	10	129911726	129911726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002417	exon8	c.A1621G	p.M541V	TGTGCATTACCAG	.	69.0	31.0	86.0	0.0	.	.	.	Atlas-SNP
TREX1	11277	hgsc.bcm.edu	37	3	48508314	48508314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	TREX1,lower_third,carcinoma,-1,1	TREX1	NM_016381	exon1	c.T425C	p.L142P	CAGGTCTGAGCAC	.	61.0	7.0	43.0	0.0	.	-1	1	Atlas-SNP
HDAC11	79885	hgsc.bcm.edu	37	3	13545733	13545733	+	Silent	SNP	C	C	T	rs145222745		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_024827	exon9	c.C789T	p.L263L	CATCCTCGAGGGG	.	125.0	28.0	127.0	0.0	0.000	.	.	Atlas-SNP
GSN	2934	hgsc.bcm.edu	37	9	124094758	124094758	+	Silent	SNP	G	G	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_000177	exon17	c.G2226C	p.T742T	GCGGACGCCCATC	.	103.0	19.0	107.0	0.0	.	.	.	Atlas-SNP
PLCZ1	89869	hgsc.bcm.edu	37	12	18872383	18872383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_033123	exon5	c.A551G	p.D184G	CAAAGGTCACTTG	.	419.0	60.0	186.0	0.0	.	.	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	37	13	32735280	32735280	+	Splice_Site	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_023037	exon17	c.1785-1G>T	.	ATTCTAGGGGTGA	.	67.0	4.0	77.0	0.0	.	.	.	Atlas-SNP
FOLR1	2348	hgsc.bcm.edu	37	11	71906977	71906977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_016729	exon4	c.C530A	p.P177H	GCCAACCTTTCCA	.	85.0	14.0	121.0	0.0	.	.	.	Atlas-SNP
IRX3	79191	hgsc.bcm.edu	37	16	54319129	54319129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	IRX3,NS,carcinoma,+1,1	IRX3	NM_024336	exon2	c.G664A	p.G222S	GTTTGCCGTCCTC	.	37.0	6.0	42.0	0.0	.	+1	1	Atlas-SNP
DDX54	79039	hgsc.bcm.edu	37	12	113623183	113623183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_024072	exon1	c.G74T	p.G25V	CGGAGCCCTTTCT	.	42.0	6.0	56.0	0.0	.	.	.	Atlas-SNP
ENKD1	84080	hgsc.bcm.edu	37	16	67697165	67697165	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_032140	exon7	c.G940C	p.A314P	TCTGGGCTCTCAG	.	68.0	11.0	54.0	0.0	.	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	37	10	127789652	127789652	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	ADAM12_ENST00000368679,NS,carcinoma,0,9	ADAM12_ENST00000368679	NM_021641	exon9	c.G909A	p.A303A	AAGCTGCGCATTG	.	76.0	10.0	115.0	0.0	.	0	9	Atlas-SNP
MAP3K2	10746	hgsc.bcm.edu	37	2	128066276	128066276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_006609	exon15	c.C1519T	p.R507W	GAAGCCGTTTGCT	.	81.0	22.0	82.0	0.0	.	.	.	Atlas-SNP
ASB9	140462	hgsc.bcm.edu	37	X	15276999	15276999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001168530	exon2	c.C163T	p.L55F	TGATGAGGTTCCT	.	189.0	24.0	155.0	0.0	.	.	.	Atlas-SNP
PDK4	5166	hgsc.bcm.edu	37	7	95225507	95225507	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002612	exon1	c.C99T	p.S33S	CAGCGGGGACGGG	.	165.0	20.0	175.0	0.0	.	.	.	Atlas-SNP
ASB9	140462	hgsc.bcm.edu	37	X	15277000	15277000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001168530	exon2	c.C162A	p.N54K	GATGAGGTTCCTC	.	190.0	25.0	155.0	0.0	.	.	.	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	37	12	22012586	22012586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_005691	exon20	c.T2439A	p.S813R	TCCCCCACTCAGG	.	336.0	23.0	141.0	0.0	.	.	.	Atlas-SNP
DDX12P	440081	hgsc.bcm.edu	37	12	9571098	9571098	+	RNA	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	TCCTACGGGAGCT	.	247.0	21.0	107.0	0.0	.	.	.	Atlas-SNP
OTUD4	54726	hgsc.bcm.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC	.	106.0	6.0	111.0	0.0	.	0	2	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	37	11	133789875	133789875	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	IGSF9B_ENST00000321016,NS,carcinoma,+1,2	IGSF9B_ENST00000321016	NM_014987	exon18	c.C3745T	p.R1249X	ACTTTCGAGAAAA	.	53.0	9.0	88.0	0.0	.	+1	2	Atlas-SNP
CKMT1B	1159	hgsc.bcm.edu	37	15	43891085	43891085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020990	exon9	c.G1072T	p.V358L	GGAGGAGTGGACA	.	94.0	4.0	99.0	0.0	.	.	.	Atlas-SNP
ITGA7	3679	hgsc.bcm.edu	37	12	56088587	56088587	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001144996	exon15	c.C2183A	p.S728X	ACCCCTGAGTAGT	.	111.0	7.0	93.0	0.0	.	.	.	Atlas-SNP
IL9R	3581	hgsc.bcm.edu	37	X	155239804	155239804	+	Missense_Mutation	SNP	C	C	G	rs71382248		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002186	exon9	c.C1296G	p.S432R	GAGCAGCAGCAGC	.	112.0	6.0	125.0	0.0	.	.	.	Atlas-SNP
LDB3	11155	hgsc.bcm.edu	37	10	88476312	88476312	+	Missense_Mutation	SNP	G	G	A	rs146265188	bycluster;byfrequency;by1000genomes	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001171610	exon10	c.G1475A	p.R492H	CCAGCCGTCCACC	.	124.0	24.0	170.0	0.0	0.002	.	.	Atlas-SNP
