Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
EVPL	2125	hgsc.bcm.edu	37	17	74003793	74003794	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	EVPL,NS,malignant_melanoma,0,1	EVPL	NM_001988	exon22	c.5493_5494del	p.1831_1832del	.	.	50.0	12.0	76.0	0.0	.	155	.	Pindel,Atlas-Indel
TAS2R20	259295	hgsc.bcm.edu	37	12	11150095	11150096	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	TAS2R20	NM_176889	exon1	c.380_381del	p.127_127del	.	.	213.0	30.0	118.0	0.0	.	17	.	Atlas-Indel
ZNF277	11179	hgsc.bcm.edu	37	7	111926968	111926969	+	Frame_Shift_Ins	INS	-	-	AGTCC	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	ZNF277	NM_021994	exon2	c.132_133insAGTCC	p.E44fs	.	.	96.0	13.0	103.0	0.0	.	46	.	Atlas-Indel
BDNF-AS	497258	hgsc.bcm.edu	37	11	27681201	27681201	+	RNA	SNP	C	C	T	rs182322619		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	.	.	.	.	TGCGCGCGCGCGT	.	51.0	9.0	43.0	0.0	.	.	.	Atlas-SNP
KCND3	3752	hgsc.bcm.edu	37	1	112524653	112524653	+	Silent	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	KCND3_ENST00000315987,NS,carcinoma,0,2	KCND3_ENST00000315987	NM_004980	exon2	c.G696A	p.A232A	GACGCACGCCGTG	.	54.0	13.0	65.0	0.0	.	0	2	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,61	PIK3CA_ENST00000263967	NM_006218	exon5	c.T1035A	p.N345K	CGTGAATGTAAAT	.	89.0	26.0	64.0	0.0	.	0	61	Atlas-SNP
QRICH1	54870	hgsc.bcm.edu	37	3	49094416	49094416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_198880	exon3	c.A1217T	p.Y406F	TTCTGGTACGTGC	.	105.0	16.0	131.0	0.0	.	.	.	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	37	12	94542893	94542893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005761	exon1	c.T146A	p.I49N	GAGCCATCGCGGC	.	29.0	5.0	10.0	0.0	.	.	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70333543	70333543	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_030625	exon2	c.C1448G	p.S483X	CAAACTCAGAGAA	.	84.0	7.0	99.0	0.0	.	.	.	Atlas-SNP
SCARB2	950	hgsc.bcm.edu	37	4	77091110	77091110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	SCARB2,NS,carcinoma,-2,1	SCARB2	NM_005506	exon8	c.C1023G	p.H341Q	GTAAAAGTGTGGG	.	89.0	11.0	172.0	0.0	.	-2	1	Atlas-SNP
TUBA1A	7846	hgsc.bcm.edu	37	12	49579631	49579631	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001270399	exon4	c.C518G	p.P173R	GGCGCCGGGTAAA	.	219.0	39.0	161.0	0.0	.	.	.	Atlas-SNP
RABEPK	10244	hgsc.bcm.edu	37	9	127996190	127996190	+	Silent	SNP	T	T	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005833	exon8	c.T1050C	p.C350C	GCTCTGTTTGGTG	.	192.0	15.0	208.0	0.0	.	.	.	Atlas-SNP
LDLRAP1	26119	hgsc.bcm.edu	37	1	25880446	25880446	+	Missense_Mutation	SNP	C	C	T	rs142920998	alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_015627	exon2	c.C122T	p.T41M	GGGAGACGCTGCT	.	76.0	21.0	56.0	0.0	.	.	.	Atlas-SNP
TGFBRAP1	9392	hgsc.bcm.edu	37	2	105886112	105886112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_004257	exon11	c.A2023G	p.K675E	CCAGCTTCCCGTG	.	40.0	10.0	35.0	0.0	.	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47947691	47947691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_138295	exon9	c.C1385T	p.S462F	ACTTGGGAGTCAG	.	69.0	9.0	75.0	0.0	.	.	.	Atlas-SNP
