Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
PRKCSH	5589	hgsc.bcm.edu	37	19	11546956	11546956	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001001329	exon2	c.G18T	p.L6L	GCTGCTGCTGCTG	.	25.0	11.0	20.0	0.0	.	.	.	Atlas-SNP
MST1P2	11209	hgsc.bcm.edu	37	1	16976573	16976573	+	RNA	SNP	A	A	G	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	.	.	.	.	AGGGTGACTACGG	.	216.0	17.0	392.0	0.0	.	.	.	Atlas-SNP
REM1	28954	hgsc.bcm.edu	37	20	30064434	30064434	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_014012	exon2	c.C186T	p.A62A	ACCTGCCCCAGAT	.	125.0	24.0	131.0	0.0	.	.	.	Atlas-SNP
KRT80	144501	hgsc.bcm.edu	37	12	52567452	52567452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_182507	exon5	c.G763T	p.V255L	CCTTCACCTCCTC	.	47.0	11.0	45.0	0.0	.	.	.	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	37	7	55273210	55273210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_005228	exon28	c.C3533T	p.P1178L	TCTTTCCCAAGGA	.	162.0	38.0	137.0	0.0	.	.	.	Atlas-SNP
C5	727	hgsc.bcm.edu	37	9	123794397	123794397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001735	exon6	c.G661A	p.E221K	CATATTCTTTAAC	.	34.0	15.0	59.0	0.0	.	.	.	Atlas-SNP
SLC16A7	9194	hgsc.bcm.edu	37	12	60168593	60168593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001270622	exon5	c.G517A	p.G173S	ACTTTTGGCTGGA	.	90.0	31.0	74.0	0.0	.	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	37	4	62679544	62679544	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_015236	exon6	c.C1213T	p.Q405X	CATGGACAAGTTT	.	89.0	30.0	78.0	0.0	.	.	.	Atlas-SNP
LRRD1	401387	hgsc.bcm.edu	37	7	91793802	91793802	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001161528	exon1	c.C715G	p.L239V	AAAAGAGTTGTCT	.	152.0	27.0	189.0	0.0	.	.	.	Atlas-SNP
TBC1D22A	25771	hgsc.bcm.edu	37	22	47287258	47287258	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_014346	exon6	c.A805T	p.N269Y	TCTAGGAACGACG	.	155.0	29.0	187.0	0.0	.	.	.	Atlas-SNP
PIDD	55367	hgsc.bcm.edu	37	11	802283	802283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_145887	exon6	c.C1088T	p.P363L	GGCTCCGGCAGCA	.	61.0	14.0	60.0	0.0	.	.	.	Atlas-SNP
UACA	55075	hgsc.bcm.edu	37	15	70976695	70976695	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	UACA_ENST00000322954,right_upper_lobe,carcinoma,-1,3	UACA_ENST00000322954	NM_018003	exon8	c.G693A	p.A231A	GCCAAGCGCATCC	.	89.0	23.0	84.0	0.0	.	-1	3	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	37	1	152084221	152084221	+	Missense_Mutation	SNP	A	A	C	rs202112040		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_007113	exon3	c.T1472G	p.L491R	TCCTCGAGCTTCA	.	40.0	8.0	40.0	0.0	.	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	37	11	62294254	62294254	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	AHNAK,NS,carcinoma,-1,1	AHNAK	NM_001620	exon5	c.G7635A	p.K2545K	GTCCACCTTGGGT	.	71.0	3.0	117.0	0.0	.	-1	1	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	37	12	1137370	1137370	+	Missense_Mutation	SNP	G	G	A	rs370287516		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_178039	exon2	c.G301A	p.G101S	CCTTACGGTGTTC	.	136.0	9.0	85.0	0.0	.	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	37	14	23874338	23874338	+	Splice_Site	SNP	T	T	C	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_002471	exon7	c.503-2A>G	.	CCGATCTGGAAGA	.	60.0	22.0	73.0	0.0	.	.	.	Atlas-SNP
FAN1	22909	hgsc.bcm.edu	37	15	31217365	31217365	+	Silent	SNP	G	G	A	rs141117593		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_014967	exon9	c.G2208A	p.P736P	GGATCCGGAAGTC	.	36.0	15.0	62.0	0.0	0.000	.	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	37	8	72987612	72987612	+	Silent	SNP	A	A	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_007332	exon1	c.T33A	p.P11P	TTCTCCAGGGCGC	.	32.0	6.0	32.0	0.0	.	.	.	Atlas-SNP
HMGXB4	10042	hgsc.bcm.edu	37	22	35661587	35661587	+	Silent	SNP	A	A	G	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	HMGXB4,caecum,carcinoma,0,1	HMGXB4	NM_001003681	exon5	c.A1206G	p.R402R	AGAGAGAGGAGAA	.	49.0	2.0	63.0	0.0	.	0	1	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70332658	70332658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_030625	exon2	c.C563T	p.T188I	AAGAGACAACTCA	.	43.0	10.0	46.0	0.0	.	.	.	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	37	2	25505572	25505572	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_175630	exon4	c.C186T	p.S62S	GTCACCGCTTTCC	.	95.0	26.0	113.0	0.0	.	.	.	Atlas-SNP
TRPV4	59341	hgsc.bcm.edu	37	12	110230496	110230496	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_021625	exon11	c.G1785A	p.G595G	CTTCAGCCCACGG	.	84.0	25.0	73.0	0.0	.	.	.	Atlas-SNP
CNBD1	168975	hgsc.bcm.edu	37	8	88363932	88363932	+	Silent	SNP	T	T	C	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_173538	exon9	c.T1062C	p.N354N	TGGAAATATAATT	.	71.0	11.0	50.0	0.0	.	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	37	X	53579361	53579361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_031407	exon63	c.C8792A	p.S2931Y	ACGGCAGAATCTC	.	149.0	57.0	101.0	0.0	.	.	.	Atlas-SNP
MTA3	57504	hgsc.bcm.edu	37	2	42836614	42836614	+	Silent	SNP	A	A	G	rs201096010	bycluster;alternate_allele	TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_020744	exon4	c.A207G	p.E69E	GGAAGAATCTGAA	.	110.0	32.0	117.0	0.0	.	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	37	16	30723654	30723654	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	SRCAP,bladder,carcinoma,+2,1	SRCAP	NM_006662	exon13	c.G1887A	p.L629L	CTGGCTGGTTACC	.	65.0	16.0	83.0	0.0	.	+2	1	Atlas-SNP
