Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KANSL1	284058	hgsc.bcm.edu	37	17	44109654	44109662	+	In_Frame_Del	DEL	GACCTGTAG	GACCTGTAG	-	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	GACCTGTAG	GACCTGTAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001193466	exon14	c.2842_2850del	p.948_950del	.	.	29.0	10.0	19.0	0.0	.	.	.	Pindel
SSX6	280657	hgsc.bcm.edu	37	X	47969832	47969832	+	RNA	SNP	T	T	G	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	CCTAGTTGAGTCA	.	233.0	21.0	224.0	0.0	.	.	.	Atlas-SNP
LIPE	3991	hgsc.bcm.edu	37	19	42912431	42912431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_005357	exon3	c.G1463T	p.G488V	ACCAGCCCAATGG	.	102.0	27.0	129.0	0.0	.	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506626	195506626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	MUC4_ENST00000463781,NS,carcinoma,-1,3	MUC4_ENST00000463781	NM_018406	exon2	c.C11825T	p.T3942I	GAGGAAGTGCTGG	.	128.0	6.0	190.0	1.0	.	-1	3	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	37	10	95987141	95987141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_016341	exon5	c.C1888T	p.H630Y	TTGGTGCATGTGG	.	165.0	35.0	194.0	0.0	.	.	.	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	37	2	25976403	25976403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ASXL2_ENST00000435504,NS,carcinoma,0,2	ASXL2_ENST00000435504	NM_018263	exon10	c.G1142A	p.S381N	TATTACCTCTGCC	.	81.0	14.0	132.0	0.0	.	0	2	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	37	9	109689998	109689998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_021224	exon3	c.C3805A	p.Q1269K	TGTAGGCAGTGCT	.	80.0	57.0	60.0	0.0	.	.	.	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	37	2	108488726	108488726	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	RGPD4,right_upper_lobe,carcinoma,+2,1	RGPD4	NM_182588	exon20	c.G4266T	p.G1422G	GAAAGGGACAGAA	.	91.0	19.0	129.0	0.0	.	+2	1	Atlas-SNP
CHST2	9435	hgsc.bcm.edu	37	3	142840363	142840363	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_004267	exon2	c.C705T	p.S235S	GTATAGCCCCGCG	.	93.0	20.0	111.0	0.0	.	.	.	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	37	14	75514926	75514926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_014381	exon2	c.C1433A	p.A478E	TCTGATGCTACAA	.	93.0	4.0	137.0	0.0	.	.	.	Atlas-SNP
PLIN3	10226	hgsc.bcm.edu	37	19	4859920	4859920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	PLIN3,bladder,carcinoma,-2,1	PLIN3	NM_001164189	exon3	c.C183A	p.D61E	TGCTGCGTCGCAG	.	97.0	4.0	110.0	0.0	.	-2	1	Atlas-SNP
CCDC157	550631	hgsc.bcm.edu	37	22	30771567	30771567	+	Missense_Mutation	SNP	G	G	A	rs368250287		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001017437	exon10	c.G1772A	p.R591H	ACATCCGCATCCG	.	97.0	5.0	107.0	0.0	.	.	.	Atlas-SNP
RPL19	6143	hgsc.bcm.edu	37	17	37360424	37360424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	RPL19,NS,carcinoma,-1,1	RPL19	NM_000981	exon5	c.C451T	p.R151C	AAGGCCCGCAAGA	.	31.0	2.0	27.0	1.0	.	-1	1	Atlas-SNP
MAG	4099	hgsc.bcm.edu	37	19	35790585	35790585	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_080600	exon5	c.G544T	p.E182X	CTGGGGGAGCCCG	.	41.0	8.0	41.0	0.0	.	.	.	Atlas-SNP
YTHDC1	91746	hgsc.bcm.edu	37	4	69202893	69202893	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	YTHDC1,colon,carcinoma,0,1	YTHDC1	NM_001031732	exon4	c.G735A	p.E245E	TTCTTCCTCCTCC	.	114.0	6.0	127.0	0.0	.	0	1	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	37	5	139887489	139887489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ANKHD1_ENST00000261805,colon,carcinoma,+1,3	ANKHD1_ENST00000261805	NM_017747	exon20	c.G3671T	p.R1224L	CCAATCGGAACAC	.	115.0	5.0	145.0	0.0	.	+1	3	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	37	16	88501926	88501926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001127464	exon2	c.G7964C	p.G2655A	TGGAAGGAGGGCC	.	17.0	8.0	36.0	0.0	.	.	.	Atlas-SNP
STAT1	6772	hgsc.bcm.edu	37	2	191843624	191843624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_007315	exon21	c.G1831A	p.A611T	TGATGGCCCCTTC	.	66.0	15.0	88.0	0.0	.	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506986	195506986	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	MUC4_ENST00000463781,extremity,malignant_melanoma,-1,2	MUC4_ENST00000463781	NM_018406	exon2	c.C11465G	p.T3822S	GGGGTGGTGTCAC	.	69.0	3.0	62.0	1.0	.	-1	2	Atlas-SNP
UQCC	55245	hgsc.bcm.edu	37	20	33891797	33891797	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	UQCC,NS,carcinoma,+1,1	UQCC	NM_018244	exon10	c.A841T	p.K281X	GATTCTTCTCCAC	.	135.0	30.0	156.0	0.0	.	+1	1	Atlas-SNP
PTK7	5754	hgsc.bcm.edu	37	6	43100169	43100169	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001270398	exon7	c.C996T	p.D332D	TGAAGACATGCCG	.	128.0	27.0	123.0	0.0	.	.	.	Atlas-SNP
DCUN1D1	54165	hgsc.bcm.edu	37	3	182665069	182665069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_020640	exon6	c.C657A	p.F219L	CGTACTGAAGTCT	.	184.0	18.0	82.0	0.0	.	.	.	Atlas-SNP
