Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.,2	KRTAP9-1	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	.	.	53.0	10.0	56.0	0.0	.	34	.	Pindel
KIT	3815	hgsc.bcm.edu	37	4	55599321	55599321	+	Missense_Mutation	SNP	A	A	T	rs121913507	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	KIT,colon,carcinoma,+1,932	KIT	NM_000222	exon17	c.A2447T	p.D816V	CCAGAGACATCAA	.	61.0	36.0	96.0	0.0	.	+1	932	Atlas-SNP
GPR22	2845	hgsc.bcm.edu	37	7	107115390	107115390	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_005295	exon3	c.G885A	p.R295R	CCTCCGGCGAGCT	.	303.0	59.0	215.0	0.0	.	.	.	Atlas-SNP
STRIP1	85369	hgsc.bcm.edu	37	1	110596376	110596376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_033088	exon21	c.G2356A	p.A786T	GACCGGGCCCACA	.	101.0	32.0	106.0	0.0	.	.	.	Atlas-SNP
CASC3	22794	hgsc.bcm.edu	37	17	38318013	38318013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	CASC3,NS,carcinoma,+1,1	CASC3	NM_007359	exon4	c.A305G	p.E102G	GTGAAGAAGGTGA	.	141.0	27.0	164.0	0.0	.	+1	1	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	37	2	15557681	15557681	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_015909	exon24	c.C2733T	p.D911D	TTCAATGTCTTTC	.	260.0	59.0	262.0	0.0	.	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	37	19	42874860	42874860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001271938	exon40	c.A7013T	p.N2338I	TTGAAAACTGGGT	.	84.0	21.0	97.0	0.0	.	.	.	Atlas-SNP
UBR1	197131	hgsc.bcm.edu	37	15	43335557	43335557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_174916	exon15	c.A1705G	p.K569E	CAGCTTTGTGACA	.	170.0	33.0	155.0	0.0	.	.	.	Atlas-SNP
ABCC4	10257	hgsc.bcm.edu	37	13	95858899	95858899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_005845	exon8	c.C1048A	p.R350S	ACACGCGGCTGGC	.	94.0	30.0	106.0	0.0	.	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72821621	72821621	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_006885	exon10	c.C10554T	p.G3518G	GCCACCGCCGCCG	.	15.0	4.0	17.0	0.0	.	.	.	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	37	5	153149891	153149891	+	Missense_Mutation	SNP	G	G	A	rs370642711		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	GRIA1_ENST00000544403,NS,carcinoma,0,3	GRIA1_ENST00000544403	NM_001258021	exon13	c.G2216A	p.R739Q	AGCAGCGGAAACC	.	147.0	36.0	198.0	1.0	.	0	3	Atlas-SNP
FAR1	84188	hgsc.bcm.edu	37	11	13743357	13743357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_032228	exon10	c.C1208T	p.T403I	GGAATACTGAGAA	.	105.0	35.0	185.0	0.0	.	.	.	Atlas-SNP
MYH11	4629	hgsc.bcm.edu	37	16	15869978	15869978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001040114	exon9	c.C867A	p.H289Q	AAAGATGTGGAAT	.	96.0	5.0	146.0	0.0	.	.	.	Atlas-SNP
PADI3	51702	hgsc.bcm.edu	37	1	17607185	17607185	+	Missense_Mutation	SNP	G	G	A	rs146338253	byfrequency;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	PADI3,NS,carcinoma,+1,1	PADI3	NM_016233	exon15	c.G1655A	p.R552H	GGAACCGTGAGGT	.	92.0	9.0	124.0	0.0	.	+1	1	Atlas-SNP
TMEM259	91304	hgsc.bcm.edu	37	19	1014364	1014364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_033420	exon2	c.C334T	p.R112C	CCACACGCAGGAT	.	216.0	51.0	308.0	0.0	.	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093420	1093420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	MUC2_ENST00000441003,NS,carcinoma,-2,2	MUC2_ENST00000441003	NM_002457	exon30	c.A5239G	p.I1747V	ACACCCATCACCA	.	35.0	2.0	51.0	2.0	.	-2	2	Atlas-SNP
KCNH6	81033	hgsc.bcm.edu	37	17	61622539	61622539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_030779	exon13	c.T2605C	p.S869P	CCTGCCTCCAATG	.	99.0	5.0	67.0	0.0	.	.	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140811114	140811114	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	MAML3_ENST00000509479,colon,carcinoma,0,4	MAML3_ENST00000509479	NM_018717	exon2	c.G1476A	p.Q492Q	CTGCTGCTGCTGC	.	56.0	5.0	73.0	1.0	.	0	4	Atlas-SNP
