Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
GPR98	84059	hgsc.bcm.edu	37	5	89949379	89949379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	GPR98	NM_032119	exon20	c.3987delC	p.Y1329fs	.	.	154.0	25.0	157.0	0.0	.	605	.	Pindel,Atlas-Indel
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382435	24382443	+	In_Frame_Del	DEL	CCTGCTCTA	CCTGCTCTA	-	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	CCTGCTCTA	CCTGCTCTA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001136234	exon1	c.1557_1565del	p.519_522del	.	.	101.0	17.0	107.0	0.0	.	.	.	Atlas-Indel
EME2	197342	hgsc.bcm.edu	37	16	1825969	1825969	+	Silent	SNP	C	C	A	rs143964421	bycluster;byfrequency;by1000genomes	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001257370	exon7	c.C951A	p.S317S	CCCCTCCCCCCGC	.	35.0	8.0	40.0	0.0	0.000	.	.	Atlas-SNP
OR2T34	127068	hgsc.bcm.edu	37	1	248737452	248737452	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001001821	exon1	c.C607G	p.L203V	ACGTGAGCATCTT	.	356.0	59.0	391.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55593667	55593667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_000222	exon11	c.A1733G	p.Y578C	TTCCTTATGATCA	.	89.0	25.0	137.0	0.0	.	.	.	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	37	1	97839132	97839132	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_000110	exon16	c.C2043A	p.G681G	GGCCAGGCCCATT	.	202.0	32.0	262.0	0.0	.	.	.	Atlas-SNP
ANKS1A	23294	hgsc.bcm.edu	37	6	34857324	34857324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	ANKS1A,NS,carcinoma,0,1	ANKS1A	NM_015245	exon1	c.G145A	p.G49S	AGCGGCGGCGGCG	.	6.0	3.0	6.0	1.0	.	0	1	Atlas-SNP
GATA3	2625	hgsc.bcm.edu	37	10	8115773	8115773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001002295	exon6	c.A1122C	p.K374N	ATCCAAAAAGTGC	.	129.0	27.0	114.0	0.0	.	.	.	Atlas-SNP
EIF4E	1977	hgsc.bcm.edu	37	4	99812429	99812429	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001130678	exon3	c.G240A	p.L80L	CAGCCGCAGGTTT	.	230.0	43.0	333.0	0.0	.	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599348	55599348	+	Missense_Mutation	SNP	T	T	A	rs121913524	alternate_allele	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	KIT,NS,lymphoid_neoplasm,0,31	KIT	NM_000222	exon17	c.T2474A	p.V825D	ATGTGGTTAAAGG	.	51.0	17.0	90.0	0.0	.	0	31	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	37	15	41854893	41854893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_006293	exon4	c.C557T	p.S186F	CTCCCTCTCCATC	.	76.0	11.0	77.0	0.0	.	.	.	Atlas-SNP
ZNF540	163255	hgsc.bcm.edu	37	19	38103206	38103206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_152606	exon5	c.T1025C	p.L342P	GACAACTTACCCG	.	77.0	4.0	99.0	0.0	.	.	.	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18892551	18892551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001040272	exon26	c.A4808G	p.N1603S	CCTGTAACCAGCA	.	60.0	11.0	67.0	0.0	.	.	.	Atlas-SNP
RBM20	282996	hgsc.bcm.edu	37	10	112559661	112559661	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001134363	exon7	c.G1785A	p.K595K	ATACAAGGAATTG	.	71.0	16.0	87.0	0.0	.	.	.	Atlas-SNP
RAC1	5879	hgsc.bcm.edu	37	7	6426908	6426908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_006908	exon2	c.C101G	p.P34R	ATATCCCTACTGT	.	142.0	18.0	127.0	0.0	.	.	.	Atlas-SNP
RNU5F-1	26828	hgsc.bcm.edu	37	1	220156424	220156424	+	RNA	SNP	T	T	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	ACTTTTTAATAAA	.	76.0	16.0	109.0	0.0	.	.	.	Atlas-SNP
BTN2A3P	54718	hgsc.bcm.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG	.	78.0	6.0	94.0	1.0	.	0	9	Atlas-SNP
CENPT	80152	hgsc.bcm.edu	37	16	67864336	67864336	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_025082	exon11	c.C819T	p.A273A	GCGACCGGCAGCC	.	100.0	4.0	111.0	0.0	.	.	.	Atlas-SNP
STRADB	55437	hgsc.bcm.edu	37	2	202344886	202344886	+	Silent	SNP	C	C	T	rs146098224		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_018571	exon12	c.C1245T	p.Y415Y	CTCATACTGGGAA	.	146.0	10.0	142.0	0.0	.	.	.	Atlas-SNP
