Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
TAS2R40	259286	hgsc.bcm.edu	37	7	142919837	142919838	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	TAS2R40	NM_176882	exon1	c.665_666del	p.222_222del	.	.	103.0	23.0	70.0	0.0	.	64	.	Atlas-Indel
PPL	5493	hgsc.bcm.edu	37	16	4943298	4943300	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	PPL	NM_002705	exon14	c.1565_1567del	p.522_523del	.	.	40.0	10.0	49.0	0.0	.	168	.	Pindel,Atlas-Indel
MARCH6	10299	hgsc.bcm.edu	37	5	10415633	10415633	+	Missense_Mutation	SNP	C	C	G	rs182494860	bycluster;by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	MARCH6,caecum,carcinoma,0,1	MARCH6	NM_005885	exon21	c.C2000G	p.T667R	TTTGGACGGGGAC	.	110.0	39.0	163.0	0.0	.	0	1	Atlas-SNP
IL4I1	259307	hgsc.bcm.edu	37	19	50397675	50397675	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_172374	exon7	c.C483A	p.T161T	GTACTGGGTGAAC	.	100.0	5.0	122.0	0.0	.	.	.	Atlas-SNP
ATP4A	495	hgsc.bcm.edu	37	19	36050035	36050035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000704	exon8	c.T1115C	p.L372P	GCCTCCAGGTTCT	.	97.0	13.0	89.0	0.0	.	.	.	Atlas-SNP
MFSD2B	388931	hgsc.bcm.edu	37	2	24247062	24247062	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001080473	exon13	c.G1411C	p.A471P	ATCCTTGCTGGGC	.	67.0	20.0	95.0	0.0	.	.	.	Atlas-SNP
SYNCRIP	10492	hgsc.bcm.edu	37	6	86346826	86346826	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	SYNCRIP,right_upper_lobe,carcinoma,-2,2	SYNCRIP	NM_006372	exon6	c.G525A	p.E175E	TTCATCCTCAAAT	.	257.0	62.0	232.0	0.0	.	-2	2	Atlas-SNP
P4HA1	5033	hgsc.bcm.edu	37	10	74768046	74768046	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000917	exon15	c.C1539A	p.S513S	TTTATTGGATACT	.	114.0	7.0	87.0	0.0	.	.	.	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	37	6	31936112	31936112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_006929	exon24	c.C2866T	p.P956S	AAGGATCCTCCCC	.	70.0	15.0	75.0	0.0	.	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	37	8	100733195	100733195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_017890	exon39	c.C7045T	p.L2349F	CTCACCCTTGTAC	.	128.0	23.0	119.0	0.0	.	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149486702	149486702	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_198455	exon31	c.C4476T	p.C1492C	GACCTGCGTCCCC	.	80.0	18.0	62.0	0.0	.	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382443	24382443	+	Silent	SNP	A	A	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001136234	exon1	c.A1566T	p.L522L	TGCTCTAGCTGCT	.	105.0	12.0	65.0	0.0	.	.	.	Atlas-SNP
SCCPDH	51097	hgsc.bcm.edu	37	1	246922343	246922343	+	Missense_Mutation	SNP	A	A	G	rs142346609	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_016002	exon7	c.A703G	p.I235V	TGGCCAATTTCTT	.	162.0	24.0	137.0	0.0	0.006	.	.	Atlas-SNP
KYNU	8942	hgsc.bcm.edu	37	2	143685255	143685255	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001199241	exon5	c.G318A	p.K106K	GGGGAAGCGTCCT	.	107.0	20.0	158.0	0.0	.	.	.	Atlas-SNP
MIR3680-1	100500917	hgsc.bcm.edu	37	11	63072405	63072405	+	RNA	SNP	C	C	G	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	.	.	.	.	TGTACTCTATATC	.	41.0	18.0	63.0	0.0	.	.	.	Atlas-SNP
DTNB	1838	hgsc.bcm.edu	37	2	25655860	25655860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_021907	exon14	c.T1352A	p.L451Q	TCCTGCAGGATCT	.	31.0	7.0	34.0	0.0	.	.	.	Atlas-SNP
