Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
CYP2A6	1548	hgsc.bcm.edu	37	19	41354213	41354213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	CYP2A6	NM_000762	exon4	c.566delA	p.D189fs	.	.	130.0	22.0	150.0	0.0	.	69	.	Atlas-Indel
MAGEC1	9947	hgsc.bcm.edu	37	X	140993904	140993906	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	MAGEC1	NM_005462	exon4	c.713_715del	p.238_239del	.	.	202.0	74.0	199.0	0.0	.	317	.	Atlas-Indel
EXOC6B	23233	hgsc.bcm.edu	37	2	72968493	72968493	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015189	exon2	c.G219C	p.Q73H	AAAGCCCTGGTAA	.	171.0	37.0	171.0	0.0	.	.	.	Atlas-SNP
ZNF251	90987	hgsc.bcm.edu	37	8	145948392	145948392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_138367	exon5	c.T653C	p.F218S	TATTTGAAGGTTT	.	206.0	27.0	215.0	0.0	.	.	.	Atlas-SNP
RNU6-28	100873756	hgsc.bcm.edu	37	15	43739017	43739017	+	RNA	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	ACAAAGGATGCTG	.	67.0	8.0	83.0	0.0	.	.	.	Atlas-SNP
CTBP1-AS1	92070	hgsc.bcm.edu	37	4	1244599	1244599	+	RNA	SNP	G	G	A	rs1732116	alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TTCCTGGCTCCCG	.	58.0	10.0	105.0	0.0	.	.	.	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	37	17	28382962	28382962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_198529	exon11	c.A2251C	p.I751L	CAAAAAATAGAAG	.	116.0	21.0	187.0	0.0	.	.	.	Atlas-SNP
KDM2A	22992	hgsc.bcm.edu	37	11	66948811	66948811	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_012308	exon4	c.C202T	p.Q68X	TATATTCAGCGGG	.	99.0	19.0	143.0	0.0	.	.	.	Atlas-SNP
GAREML	150946	hgsc.bcm.edu	37	2	26410715	26410715	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001168241	exon6	c.C2214T	p.G738G	ACTTGGCCCCTCC	.	90.0	14.0	139.0	0.0	.	.	.	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	37	13	50589360	50589360	+	RNA	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TCTTCAGATATAT	.	81.0	17.0	128.0	0.0	.	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60921757	60921757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_005560	exon8	c.G1172T	p.G391V	CAGACACCCCCAC	.	67.0	8.0	95.0	0.0	.	.	.	Atlas-SNP
CHDC2	286464	hgsc.bcm.edu	37	X	36162793	36162793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_173695	exon11	c.C1376A	p.T459K	CCAGAACAAAGAG	.	97.0	32.0	109.0	0.0	.	.	.	Atlas-SNP
TOP1MT	116447	hgsc.bcm.edu	37	8	144406735	144406735	+	Missense_Mutation	SNP	C	C	T	rs200437445	bycluster	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	TOP1MT,right_lower_lobe,carcinoma,0,1	TOP1MT	NM_052963	exon6	c.G736A	p.V246I	ACGTGACGGTGTT	.	74.0	8.0	87.0	0.0	0.001	0	1	Atlas-SNP
RPS6KA5	9252	hgsc.bcm.edu	37	14	91366534	91366534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_182398	exon11	c.G1297C	p.G433R	CTTCTCCCAGGGG	.	134.0	21.0	169.0	0.0	.	.	.	Atlas-SNP
CLDN14	23562	hgsc.bcm.edu	37	21	37833547	37833547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_144492	exon3	c.C447A	p.N149K	CAGCGGGTTGTAG	.	72.0	21.0	75.0	0.0	.	.	.	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	37	2	207432037	207432037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003812	exon15	c.G1485T	p.R495S	CAACAGGCCAACA	.	162.0	21.0	115.0	0.0	.	.	.	Atlas-SNP
GTF2I	2969	hgsc.bcm.edu	37	7	74105442	74105442	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_032999	exon3	c.T237C	p.Y79Y	AAAATATTGTAAG	.	235.0	27.0	236.0	0.0	.	.	.	Atlas-SNP
OR5C1	392391	hgsc.bcm.edu	37	9	125551981	125551981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	OR5C1,NS,carcinoma,-1,1	OR5C1	NM_001001923	exon1	c.G770A	p.G257E	TGTACGGGACACT	.	81.0	9.0	130.0	1.0	.	-1	1	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70925910	70925910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003813	exon2	c.G1694A	p.C565Y	TTCAATGTGAGAA	.	193.0	35.0	268.0	0.0	.	.	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	37	7	44555488	44555488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_013389	exon19	c.T3791A	p.I1264N	AAGAAGATCTGAA	.	87.0	14.0	108.0	0.0	.	.	.	Atlas-SNP
RRAS2	22800	hgsc.bcm.edu	37	11	14316390	14316390	+	Missense_Mutation	SNP	T	T	A	rs113954997	bycluster	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	RRAS2,NS,carcinoma,+1,4	RRAS2	NM_012250	exon3	c.A215T	p.Q72L	TCTTCTTGTCCTG	.	186.0	73.0	330.0	0.0	0.500	+1	4	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36224181	36224181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_014727	exon28	c.C6731G	p.P2244R	TGCTGCCCGTGGT	.	65.0	14.0	94.0	0.0	.	.	.	Atlas-SNP
SPAG7	9552	hgsc.bcm.edu	37	17	4863123	4863123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_004890	exon6	c.A506G	p.H169R	ATGAGGTGGCTGT	.	56.0	13.0	82.0	0.0	.	.	.	Atlas-SNP
SNW1	22938	hgsc.bcm.edu	37	14	78197400	78197400	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_012245	exon10	c.G964C	p.E322Q	GTTTCTCTTCATG	.	85.0	16.0	127.0	0.0	.	.	.	Atlas-SNP
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11182975	11182975	+	RNA	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TTCTGCTAGAAGA	.	306.0	32.0	270.0	0.0	.	.	.	Atlas-SNP
DPY19L2P2	349152	hgsc.bcm.edu	37	7	102920486	102920486	+	RNA	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	GCCGCCTAGGGCC	.	43.0	5.0	41.0	0.0	.	.	.	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	37	9	33344183	33344183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_147134	exon14	c.C2341T	p.P781S	GACCATCCAGGTG	.	120.0	24.0	156.0	0.0	.	.	.	Atlas-SNP
ALDH1B1	219	hgsc.bcm.edu	37	9	38395924	38395924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_000692	exon2	c.C179A	p.T60N	ACCCTACCACCGG	.	41.0	8.0	51.0	0.0	.	.	.	Atlas-SNP
REXO1	57455	hgsc.bcm.edu	37	19	1826917	1826917	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_020695	exon2	c.C1871G	p.T624S	ACGCTGGTGGACT	.	176.0	27.0	278.0	0.0	.	.	.	Atlas-SNP
AFTPH	54812	hgsc.bcm.edu	37	2	64778749	64778749	+	Missense_Mutation	SNP	C	C	A	rs113401509	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	AFTPH_ENST00000238855,NS,carcinoma,0,2	AFTPH_ENST00000238855	NM_017657	exon2	c.C141A	p.F47L	TGATTTCGATACA	.	185.0	18.0	221.0	0.0	0.001	0	2	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140994527	140994527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_005462	exon4	c.C1337T	p.P446L	AGATTCCTGTGAG	.	234.0	66.0	267.0	0.0	.	.	.	Atlas-SNP
N6AMT1	29104	hgsc.bcm.edu	37	21	30257631	30257631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_182749	exon1	c.C37T	p.H13Y	CCACGTGCCCGTG	.	139.0	15.0	145.0	0.0	.	.	.	Atlas-SNP
LIG3	3980	hgsc.bcm.edu	37	17	33310332	33310332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_013975	exon2	c.C308T	p.A103V	GCACAGCTGGCTG	.	136.0	20.0	189.0	0.0	.	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	37	2	153476069	153476069	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	FMNL2,rectum,carcinoma,0,2	FMNL2	NM_052905	exon15	c.C1674A	p.P558P	GCCGCCCCCTCCT	.	91.0	24.0	71.0	0.0	.	0	2	Atlas-SNP
NVL	4931	hgsc.bcm.edu	37	1	224514122	224514122	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001243147	exon2	c.C102A	p.V34V	CGCTAAGACTCCA	.	94.0	5.0	125.0	0.0	.	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2_ENST00000405201	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	45.0	5.0	69.0	1.0	.	0	11	Atlas-SNP
FAM86B1	85002	hgsc.bcm.edu	37	8	12043908	12043908	+	Missense_Mutation	SNP	A	A	G	rs71513301		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	FAM86B1,NS,carcinoma,0,1	FAM86B1	NM_001083537	exon5	c.T593C	p.M198T	TGGACCATTGCTA	.	34.0	7.0	16.0	0.0	1.000	0	1	Atlas-SNP
PTPRO	5800	hgsc.bcm.edu	37	12	15722430	15722430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_030667	exon19	c.G2827C	p.E943Q	CAGTTTGAGGTGA	.	1415.0	137.0	1236.0	1.0	.	.	.	Atlas-SNP
