Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
HERPUD2	64224	hgsc.bcm.edu	37	7	35674032	35674033	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	HERPUD2	NM_022373	exon8	c.949_950insA	p.A317fs	.	.	161.0	25.0	146.0	0.0	.	47	.	Atlas-Indel
SHE	126669	hgsc.bcm.edu	37	1	154461552	154461554	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	SHE	NM_001010846	exon3	c.998_1000del	p.333_334del	.	.	155.0	24.0	121.0	0.0	.	41	.	Atlas-Indel
CPT2	1376	hgsc.bcm.edu	37	1	53676901	53676902	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	CPT2	NM_000098	exon4	c.1554_1555del	p.518_519del	.	.	96.0	27.0	81.0	0.0	.	34	.	Pindel,Atlas-Indel
FLG2	388698	hgsc.bcm.edu	37	1	152328051	152328051	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	FLG2,NS,carcinoma,-1,1	FLG2	NM_001014342	exon3	c.A2211G	p.S737S	TGAGCCTGATCCA	.	172.0	7.0	158.0	0.0	.	-1	1	Atlas-SNP
KIF3C	3797	hgsc.bcm.edu	37	2	26203245	26203245	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002254	exon1	c.C1542G	p.Y514X	TACCTTGTACTTG	.	104.0	16.0	55.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45232075	45232075	+	Missense_Mutation	SNP	A	A	T	rs199711781	bycluster	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon8	c.T920A	p.V307E	TCAATTACAGGAG	.	93.0	6.0	62.0	2.0	0.001	0	2	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	37	9	2039791	2039791	+	Silent	SNP	G	G	A	rs142219087	byfrequency	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_139045	exon4	c.G681A	p.Q227Q	GCAGCAGCAGCAG	.	63.0	17.0	40.0	0.0	0.001	.	.	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	37	1	220340992	220340992	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_012414	exon25	c.G2832A	p.K944K	TATCCACTTGGCT	.	211.0	36.0	175.0	0.0	.	.	.	Atlas-SNP
DHRS7C	201140	hgsc.bcm.edu	37	17	9683343	9683343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001220493	exon3	c.C280T	p.P94S	GCTTTGGGGTGAA	.	85.0	16.0	113.0	0.0	.	.	.	Atlas-SNP
PTPRF	5792	hgsc.bcm.edu	37	1	44057100	44057100	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002840	exon9	c.G1407A	p.A469A	CGACGCGGGGCTC	.	36.0	8.0	36.0	0.0	.	.	.	Atlas-SNP
KIRREL	55243	hgsc.bcm.edu	37	1	157963501	157963501	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_018240	exon1	c.C35G	p.S12C	CTCTCTCCGATAC	.	342.0	44.0	241.0	0.0	.	.	.	Atlas-SNP
PITRM1-AS1	100507034	hgsc.bcm.edu	37	10	3190094	3190094	+	RNA	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	CACACACGAGTAA	.	48.0	9.0	52.0	0.0	.	.	.	Atlas-SNP
TMEM176A	55365	hgsc.bcm.edu	37	7	150501507	150501507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_018487	exon6	c.G613A	p.A205T	CTTCTGGCATCTC	.	94.0	17.0	102.0	0.0	.	.	.	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	37	22	24718079	24718079	+	Silent	SNP	A	A	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001145468	exon4	c.A1131T	p.I377I	CAGCATAGAGCGC	.	77.0	14.0	46.0	0.0	.	.	.	Atlas-SNP
WDR78	79819	hgsc.bcm.edu	37	1	67313188	67313188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_207014	exon8	c.C1270T	p.R424C	GCTGACGATAAGC	.	213.0	40.0	215.0	0.0	.	.	.	Atlas-SNP
KLC4	89953	hgsc.bcm.edu	37	6	43034061	43034061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_201523	exon5	c.G643A	p.A215T	CAAGGTGCTACAG	.	69.0	19.0	95.0	0.0	.	.	.	Atlas-SNP
WDR52	55779	hgsc.bcm.edu	37	3	113115497	113115497	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001164496	exon14	c.A1647G	p.K549K	GAGCCCTTTTGGA	.	98.0	4.0	103.0	0.0	.	.	.	Atlas-SNP
CD320	51293	hgsc.bcm.edu	37	19	8367841	8367841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_016579	exon4	c.G526A	p.G176R	CATCCCCTTCCGG	.	106.0	24.0	65.0	0.0	.	.	.	Atlas-SNP
USP13	8975	hgsc.bcm.edu	37	3	179439252	179439252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_003940	exon8	c.G963C	p.Q321H	GATCCAGGAGTCG	.	218.0	42.0	164.0	0.0	.	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	37	9	2039803	2039803	+	Silent	SNP	G	G	A	rs149130789		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_139045	exon4	c.G693A	p.Q231Q	GCAGCAGCAGCAG	.	62.0	15.0	60.0	0.0	0.000	.	.	Atlas-SNP
NRAS	4893	hgsc.bcm.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	bycluster;byfrequency;byhapmap	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG	.	210.0	39.0	137.0	0.0	.	-1	2068	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	37	19	55870472	55870472	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001145402	exon9	c.G1764T	p.P588P	CACCACCGGCTCC	.	141.0	17.0	141.0	0.0	.	.	.	Atlas-SNP
C7orf55-LUC7L2	100996928	hgsc.bcm.edu	37	7	139091951	139091951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001244584	exon7	c.G740A	p.S247N	CTTCCAGTTTTCA	.	107.0	14.0	77.0	0.0	.	.	.	Atlas-SNP
